Sequence
atgc intronic sequence ATGC exonic sequencegtaagccatcttcaaaggcattatatattctccaagtccttaatgcccaaactccatttgagacataagagcctattttcttgacctttaatctacagtcctattgtttttttctttcttgttgtagATTCATGGTGGACTGGGTGCCCATAAGAGTGTACAGAAACCATGCAGACAAGGGGGTGGCCTTTCCCAGATGGCAGCCAATGAGCATCAAAATCAGCCTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0088g00650.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G40040.1 (Glycine max), 3'ss of exon 3
gtaagccatcttcaaaggcattatatattctccaagtccttaatgcccaaactccatttgagacataagagcctattttcttgaccttt--aatctacagtcctattgtttttttctttcttgttgtagATTCATGGTGGACTGGGTGCCCATAAGAGTGTACAGAAACCATGCAGACAAGGGGGTGGCCTTTCCCAGATGGCAGCCAATGAGCATCAAAATCAGCCTA
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-----------------------gatac-ctttaactttttaaatc----attttctgtaccatgtaagtttatatattattgtgttttcaaaaggttagttgcaaagttgactt-tgccttttttcagGTTAATGGTGGATATGATTCCTATAAGAGTTTATAGAAACCATGCGGACAAGGGTGTGGCATTTCCTAGATGGCAGCCAATGAGTCTGAAAGCAACCTTG
upper sequence: Vv03s0088g00650.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G27380.1 (Glycine max), 3'ss of exon 3
gtaagccatcttcaaaggcattatatattctccaagtccttaatgcccaaactccatttgagacataagagcctattttcttgacctttaatctacagtcctattgtttttttctttcttgttgtagATTCATGGTGGACTGGGTGCCCATAAGAGTGTACAGAAACCATGCAGACAAGGGGGTGGCCTTTCCCAGATGGCAGCCAATGAGCATCAAAATCAGCCTA
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-------------gaaaatattttaactttttaaatcattttctgcaccatgttaagtttatatattg-----tgtttccaaaaggctagttgtaaagt-----tgactttgcctttatt----cagATTAATGGTGGATATGATTCCTATAAGAGTTTATAGAAACCACGCAGACAAGGGTGTAGCATTTCCTAGATGGCAGCCAATGAGTCTGAAAGCAACCTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctattttcttgacctttaatctacagtcctattgtttttttctttcttgttgtagATTCATGGTGGACTGGGTGCCCATAAGAGTGTACAGAAACCATGCAGACAAGGGGGTGGCCTTTCCCAGATGGCAGCCAATGAGCATCAAAATCAGCCTA
tcctattgtttttttc CT-rich tract
tattgtttttttcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagccatcttcaaaggcattatatattctccaagtccttaatgcccaaactccatttgagacataagagcctattttcttgacctttaatctacagtcctattgtttttttctttcttgttgtagATTCATGGTGGACTGGGTGCCCATAAGAGTGTACAGAAACCATGCAGACAAGGGGGTGGCCTTTCCCAGATGGCAGCCAATGAGCATCAAAATCAGCCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG