Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatccttttcagaggttgacctgccattttgatgatatctttgcctgttcttcaattatatgtcttgcatctttttctgtttagaacttcggatttatgtccttgtgactttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATTCATGGTAAATATTCTCATGAGGAGACTATTGCAACTGCATCTTTTGCAG

Basic information

species Vitis vinifera
transcript Vv03s0063g02030.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0063g02030.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os03g52170.1 (Oryza sativa), 3'ss of exon 3
gtatccttttcagaggttgacctgccattttgatgatatctttgcctgttcttcaattatatgtcttgcatctttttctgtttaga--acttcggatttatgtccttgtgactttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATTCATGGTAAATATTCTCATGAGGAGACTATTGCAACTGCATCTTTTGCAG
                 ||   | || |||||| |||  | |   |  ||||     | |   |||   ||  |      |  |    |  || | || |||  ||        | | |  |||| ||||| || ||||| |||||||||||||| || |||||||| || |||||||| ||||| || ||||| || ||| |||| ||||| || |||||||
----------------gtgggtttcccttttgaagatcacctgatcctttcta----tgtcgctctgagattatcagaaatcaaaggtatatctggttgatgaactc-cactactatatatagGTGTGGAACATGGTTGAAAAGCACAAGAAGGGTGACTACACTTCTATTATTCATGGAAAATACTCCCATGAAGAAACTGTTGCCACTGCTTCCTTTGCAG

upper sequence: Vv03s0063g02030.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G12870.1 (Glycine max), 3'ss of exon 3
gtatccttttcagaggttgacctgccattttgatgatatctttgcctgttcttcaattatatgtcttgcatctttttctgtttagaacttcggatttatgtccttgtgactttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATTCATGGTAAATATTCTCATGAGGAGACTATTGCAACTGCATCTTTTGCAG
|||  |||||     | || | ||  ||| || ||||    |||| |    |  | | |||| | ||    | |         |  |||  |   || | || |    |  |||| | ||||| ||||||  |||||| || |||||| | ||||| || || ||  | ||||||||||||||| | |||||||| ||| | |||||||| |||||||| |
gtactcttttgtatagatggcttgatattgtgctgat----ttgcataacttcaattcatatatattttgccatgcatcaccaaatact--gagattttttcttcaataaattgtcttaagGTATGGAATTCTGTTGAAAAACACAAGCAAGGAGATTATACCTCTGTAATTCATGGTAAATATGCCCATGAGGAAACTGTAGCAACTGCTTCTTTTGCTG

upper sequence: Vv03s0063g02030.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA12G05010.2 (Glycine max), 3'ss of exon 3
gtatccttttcagaggttgacctgccattttgatgatatctttgcctgttcttcaattatatgtcttgcatctttttctgtttagaacttcggatttatgtccttgtgactttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATTCATGGTAAATATTCTCATGAGGAGACTATTGCAACTGCATCTTTTGCAG
   | || ||     | || | ||  ||| || ||||    |||| |    |  | | |||| | ||    | |       | |  |||   ||||| | || |    |  |||| | ||||| ||||||  |||||| || |||||| |  |||| || || ||  | ||||||||||||||| | |||||||| ||| | |||||||| |||||||| |
--gtactcttgtatagatggcttgatattgtgctgat----ttgcataacttcaattcatatatattttgccatgcatcactaaatacta-agattttt-tcttcaataaattgtcttaagGTATGGAATTCTGTTGAAAAACACAAGCAACGAGATTATACCTCTGTAATTCATGGTAAATATGCCCATGAGGAAACTGTAGCAACTGCTTCTTTTGCTG

upper sequence: Vv03s0063g02030.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G34350.1 (Arabidopsis thaliana), 3'ss of exon 3
gtatccttttcagaggttgacctgccattttgatgatatctttgc-ctgttcttcaattatatgtcttgcatctttttctgtttagaacttcggatttatgtccttgtgactttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATTCATGGTAAATATTCTCATGAGGAGACTATTGCAACTGCATCTTTTGCAG
             |  ||  ||| |  |    || |   | |     ||||  ||   |  || ||| ||||   ||  || |   | ||||   |||      |||||||| |     ||||| ||||| |  |||||||||||||||||||| || ||||| ||| | || ||||||||||||  |||||| ||||| ||||||||||| ||||||||||
-----------gtacatt--cctcctgtggccataaatccgtaatattgtttctcgcattcatctctagcataggttattgat---atcttcctttttg-acatttgtgactcta----aagGTCTGGAACACGGTTGAGAAGCACAAGAAGGGGGAATACACATCAGTAATCCATGGTAAATATAATCATGAAGAGACGATTGCAACTGCGTCTTTTGCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351046790|gb|FQ454400.1|FQ454400
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAAAAAGGAGA
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGA
EST: gi|351044469|gb|FQ443000.1|FQ443000
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACT
EST: gi|351057263|gb|FQ450970.1|FQ450970
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|110717800|gb|EE093973.1|EE093973
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|110719478|gb|EE094651.1|EE094651
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|351052829|gb|FQ456557.1|FQ456557
EST:     GCGACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTCAT                         GTTTGGAATATTGATGAGAAGCACAAGAAGGGAGAGT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGT
EST: gi|351052060|gb|FQ455353.1|FQ455353
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|351030516|gb|FQ436942.1|FQ436942
EST:     CAACAAAAATGGACAAATTGTTGATACAACTTTGCCCATGGGTATCTAAG                         GTTGGGAATATTGTTGAGAAGCACAA
genomic: CAACAAAAATGTACAAATTGTTGATACAACTT-GCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAA
EST: gi|351045640|gb|FQ440825.1|FQ440825
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|352795056|gb|FQ477166.1|FQ477166
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|349825083|gb|FQ415630.1|FQ415630
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAA                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCA
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCA
EST: gi|349820816|gb|FQ404201.1|FQ404201
EST:     GCAACCAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACGAAAAAGGG
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCAC-AAGAAGGG
EST: gi|110730477|gb|EE107601.1|EE107601
EST:     TGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
genomic: TGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|351027606|gb|FQ446770.1|FQ446770
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGCACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|349814915|gb|FQ410138.1|FQ410138
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGA
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGA
EST: gi|351052095|gb|FQ455388.1|FQ455388
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTTCA-TCAT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTT-CAATCAT
EST: gi|349822084|gb|FQ408413.1|FQ408413
EST:     CAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTTCTA-G                         GTTTGGAATATTGTTGAGAAGCACAAGAGGGGAGAGTA
genomic: CAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTT-CTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTA
EST: gi|349825988|gb|FQ415793.1|FQ415793
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATCGTTGAGAAGCACAAGAAGGGAGAGTACACTTCA
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCA
EST: gi|351046046|gb|FQ441429.1|FQ441429
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|30299002|gb|CB975796.1|CB975796
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|349817981|gb|FQ407970.1|FQ407970
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAAAGTACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|351025782|gb|FQ427794.1|FQ427794
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGGATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|294964999|gb|GW838802.1|GW838802
EST:     GGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
genomic: GGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|351022599|gb|FQ447121.1|FQ447121
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAAAAGGGAGAGTACACT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACT
EST: gi|349810171|gb|FQ401617.1|FQ401617
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAACACAAGAAAGGAGAGTACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|110428858|gb|EC995341.1|EC995341
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|352772999|gb|FQ470614.1|FQ470614
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|349825086|gb|FQ415633.1|FQ415633
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|351013165|gb|FQ424870.1|FQ424870
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAAAAGGGAGAGTACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|351019752|gb|FQ439569.1|FQ439569
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAA                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGCACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|351057455|gb|FQ454137.1|FQ454137
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|351054758|gb|FQ462788.1|FQ462788
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCGTGGGTTTCTAAG                         GTTTGGAATATTGTTGAAAAGCACAAGAAGGGAGAGTACACTTCAAT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAAT
EST: gi|110718664|gb|EE095753.1|EE095753
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|351053663|gb|FQ440172.1|FQ440172
EST:     CAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAAG                         GTT-GGAATATTGGTTGAGAA-CACA
genomic: CAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAA-Ggtatcctttt ... ttgtttgaagGTTTGGAATATTG-TTGAGAAGCACA
EST: gi|349816327|gb|FQ399437.1|FQ399437
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAA
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAA
EST: gi|351045337|gb|FQ451785.1|FQ451785
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTG-AATATTGTTGAGAAACACAAAAAGGGAGAGTACA
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACA
EST: gi|349810630|gb|FQ402873.1|FQ402873
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCAC
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCAC
EST: gi|349810223|gb|FQ401669.1|FQ401669
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCAT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCAT
EST: gi|349831066|gb|FQ420736.1|FQ420736
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAA                         GTTTGGAATATTG
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTG
EST: gi|110377192|gb|EC942249.1|EC942249
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|349831065|gb|FQ420735.1|FQ420735
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAA                         GTTTGGAATATTGTTGAAAAGCACAAGAAGGGAGAGTACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|349822370|gb|FQ412634.1|FQ412634
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGC
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGC
EST: gi|351044769|gb|FQ449023.1|FQ449023
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTTCA-TCAT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTT-CAATCAT
EST: gi|349828945|gb|FQ419278.1|FQ419278
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAA
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAA
EST: gi|349828023|gb|FQ415351.1|FQ415351
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|351028949|gb|FQ434950.1|FQ434950
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGA
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGA
EST: gi|351019525|gb|FQ439342.1|FQ439342
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|352795535|gb|FQ480123.1|FQ480123
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|351033217|gb|FQ461989.1|FQ461989
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|352772458|gb|FQ469983.1|FQ469983
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGAAATATTGTTGA
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGA
EST: gi|110721031|gb|EE097565.1|EE097565
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|349815851|gb|FQ401007.1|FQ401007
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCA
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCA
EST: gi|30299776|gb|CB976570.1|CB976570
EST:     CAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTCCCTTAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
genomic: CAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|352768808|gb|FQ468020.1|FQ468020
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|110723505|gb|EE100895.1|EE100895
EST:     GCAACAAAA-TGTACAA-TTGTTGATACA-CTTGCCCATGGGTTTCTAAA                         GTTTGGAATAT-GTTGAGAAGCACAAGAAGGGAGAGTAC-CTTCA-TCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|351032977|gb|FQ461866.1|FQ461866
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCCAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|352768229|gb|FQ469404.1|FQ469404
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATNGGTTTCTAAG                         GTTTGGAATATTTGT-GAGAAGCACAAGAAGGGAGAGTACACTTCAATCAT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATT-GTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCAT
EST: gi|351045161|gb|FQ451609.1|FQ451609
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|352777852|gb|FQ466905.1|FQ466905
EST:     GCA-CAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GGTTGGAATATGGTTAAGAACCACAAG
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAG
EST: gi|349818807|gb|FQ409341.1|FQ409341
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAATACACT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACT
EST: gi|30300200|gb|CB976994.1|CB976994
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|351025066|gb|FQ433483.1|FQ433483
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAG
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAG
EST: gi|349818589|gb|FQ403224.1|FQ403224
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAGTCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|349810605|gb|FQ402848.1|FQ402848
EST:     GCAACAAANATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAAAAGGGAGAGTACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|351052512|gb|FQ456360.1|FQ456360
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|351025668|gb|FQ426682.1|FQ426682
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAA                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|352798520|gb|FQ480545.1|FQ480545
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|351054344|gb|FQ450427.1|FQ450427
EST:     GCAACACAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATT
EST: gi|351057177|gb|FQ450884.1|FQ450884
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAG
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAG
EST: gi|351043875|gb|FQ452669.1|FQ452669
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAAGGAGAGTACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|349824346|gb|FQ417733.1|FQ417733
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTATGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|351023290|gb|FQ432673.1|FQ432673
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTC
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTC
EST: gi|351022583|gb|FQ447105.1|FQ447105
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGAAATATTGTTGAGAAGCACAAGAAGGGA
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGA
EST: gi|351057232|gb|FQ450939.1|FQ450939
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAAGGAGAGTA
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTA
EST: gi|351030316|gb|FQ432254.1|FQ432254
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAAGGAGAGTACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|352786531|gb|FQ479738.1|FQ479738
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|30303689|gb|CB980483.1|CB980483
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|349827089|gb|FQ421362.1|FQ421362
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAG                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATT
EST: gi|351045514|gb|FQ440699.1|FQ440699
EST:     GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAA                         GTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTTCAATCAT
genomic: GCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGgtatcctttt ... ttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTT-CAATCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcatctttttctgtttagaacttcggatttatgtccttgtgactttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATTCATGGTAAATATTCTCATGAGGAGACTATTGCAACTGCATCTTTTGCAG
                                           ctttgttt  CT-rich tract
                           atttatgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatccttttcagaggttgacctgccattttgatgatatctttgcctgttcttcaattatatgtcttgcatctttttctgtttagaacttcggatttatgtccttgtgactttgtttgaagGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATTCATGGTAAATATTCTCATGAGGAGACTATTGCAACTGCATCTTTTGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA