1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcattttcccttgggggactaaaattatttgtaagaaaaaaaagctctgctttaaccttatctttgttcattggtttttccctgtcacctctatcatcagAAATCAAAGTGCTGGAAGCTGACATGCTAGACTTGCCCTTTAGCAACGAGTGTTTTGATGTGGTTATTGAGAAAGGAACCATG
species | Vitis vinifera |
transcript | Vv03s0063g02010.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CATTGCTGTGGAGAAGATGCAGAAACGATTACTATCCAAGGGCTATAAAG AAATCAAAGTGCTGGAAGCTGACATGCTAGACTTGCCCTTTAGCAACGAGT
genomic: CATTGCTGTGGAGAAGATGCAGAAACGATTACTATCCAAGGGCTATAAAGgtgtgtggcc ... ctatcatcagAAATCAAAGTGCTGGAAGCTGACATGCTAGACTTGCCCTTTAGCAACGAGT
tctgctttaaccttatctttgttcattggtttttccctgtcacctctatcatcagAAATCAAAGTGCTGGAAGCTGACATGCTAGACTTGCCCTTTAGCAACGAGTGTTTTGATGTGGTTATTGAGAAAGGAACCATG
ctttaac putative branch site (score: 3)
tttttccctgtcacct putative PPT
ttatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcattttcccttgggggactaaaattatttgtaagaaaaaaaagctctgctttaaccttatctttgttcattggtttttccctgtcacctctatcatcagAAATCAAAGTGCTGGAAGCTGACATGCTAGACTTGCCCTTTAGCAACGAGTGTTTTGATGTGGTTATTGAGAAAGGAACCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - ttggggg
- - - - - - - - - - aaaatta
- - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - -gctctgc