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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaagtgtagtcaaaaccttggtttttataaaatgatatttggaaaattaatgccactaacccttctttactgctctttgattgctacagGCGGATATGGAAGTCCAGAAAAATCAG

Basic information

species Vitis vinifera
transcript Vv03s0063g00310.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110359889|gb|EC922177.1|EC922177
EST:     TGGAAGTTGCAAAACTGAAAGAGGCGAATGAAGAATTGCAGAAGAAACAG                         GCGGATATGGAAGTCCAGAAAAATCAG
genomic: TGGAAGTTGCAAAACTGAAAGAGGCGAATGAAGAATTGCAGAAGAAACAGgttaagtgta ... attgctacagGCGGATATGGAAGTCCAGAAAAATCAG
EST: gi|18459306|gb|BM437584.1|BM437584
EST:     TGGAAGTTGCAAAACTGAAAGAGGCGAATGAAGAATTGCAGAAGAAACAG                         GCGGATATGGAAGTCCAGAAAAATCAG
genomic: TGGAAGTTGCAAAACTGAAAGAGGCGAATGAAGAATTGCAGAAGAAACAGgttaagtgta ... attgctacagGCGGATATGGAAGTCCAGAAAAATCAG
EST: gi|352781564|gb|FQ468408.1|FQ468408
EST:     TGGAAGTTGCAAAACTGANAGAGGCGAATGAAGAATTGCAGAAGAAACAG                         GCGGATATGGAAGTCCAGAAAAATCAG
genomic: TGGAAGTTGCAAAACTGAAAGAGGCGAATGAAGAATTGCAGAAGAAACAGgttaagtgta ... attgctacagGCGGATATGGAAGTCCAGAAAAATCAG
EST: gi|71882440|gb|DT031495.1|DT031495
EST:     TGGAAGTTGCAAAACTGAAAGAGGTGAATGAAGAATTGCAGAAGAAACAG                         GCGGATATGGAAGTCCAGAAAAATCAG
genomic: TGGAAGTTGCAAAACTGAAAGAGGCGAATGAAGAATTGCAGAAGAAACAGgttaagtgta ... attgctacagGCGGATATGGAAGTCCAGAAAAATCAG
EST: gi|110372729|gb|EC936916.1|EC936916
EST:     TGGAAGTTGCAAAACTGAAAGAGGTGAATGAAGAATTGCAGAAGAAACAG                         GCGGATATGGAAGTCCAGAAAAATCAG
genomic: TGGAAGTTGCAAAACTGAAAGAGGCGAATGAAGAATTGCAGAAGAAACAGgttaagtgta ... attgctacagGCGGATATGGAAGTCCAGAAAAATCAG
EST: gi|110362700|gb|EC926250.1|EC926250
EST:     TGGAAGTTGCAAAACTGAAAGAGGCGAATGAAGAATTGCAGAAGAAACAG                         GCGGATATGGAAGTCCAGAAAAATCAG
genomic: TGGAAGTTGCAAAACTGAAAGAGGCGAATGAAGAATTGCAGAAGAAACAGgttaagtgta ... attgctacagGCGGATATGGAAGTCCAGAAAAATCAG
EST: gi|71883659|gb|DT032714.1|DT032714
EST:     TGGAAGTTGCAAAACTGAAAGAGGTGAATGAAGAATTGCAGAAGAAACAG                         GCGGATATGGAAGTCCAGAAAAATCAG
genomic: TGGAAGTTGCAAAACTGAAAGAGGCGAATGAAGAATTGCAGAAGAAACAGgttaagtgta ... attgctacagGCGGATATGGAAGTCCAGAAAAATCAG
EST: gi|71886572|gb|DT035627.1|DT035627
EST:     TGGAAGTTGCAAAACTGAAAGAGGTGAATGAAGAATTGCAGAAGAAACAG                         GCGGATATGGAAGTCCAGAAAAATCAG
genomic: TGGAAGTTGCAAAACTGAAAGAGGCGAATGAAGAATTGCAGAAGAAACAGgttaagtgta ... attgctacagGCGGATATGGAAGTCCAGAAAAATCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatttggaaaattaatgccactaacccttctttactgctctttgattgctacagGCGGATATGGAAGTCCAGAAAAATCAG
        aaaattaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttaagtgtagtcaaaaccttggtttttataaaatgatatttggaaaattaatgccactaacccttctttactgctctttgattgctacagGCGGATATGGAAGTCCAGAAAAATCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG