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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagggccacagactcatcaatcttaatacacaaaatatagatacacatatatctccatgttgctgaattcagtctaattatcgaaccactttgtaaacagTTTCTATCCATGAAACTAGCAGCTGTGAATCCCAGACTTGACTTCAACATCGACAACTTCCTAGCAAAAGAG

Basic information

species Vitis vinifera
transcript Vv03s0038g04760.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110360400|gb|EC923471.1|EC923471
EST:     TGCTCGATGAAATCATCAATTATGTACAATCTCTTCAACGACAAGTAGAG                         TTTCTATCCATGAAACTAGCAGCTGTGAACCCCAGACTTGACTTCAACATC
genomic: TGCTCGATGAAATCATCAATTATGTACAATCTCTTCAACGACAAGTAGAGgtacagggcc ... ttgtaaacagTTTCTATCCATGAAACTAGCAGCTGTGAATCCCAGACTTGACTTCAACATC
EST: gi|33408116|gb|CF213743.1|CF213743
EST:     TGCTCGATGAAATCATCAATTATGTACAATCTCTTCAACGACAAGTAGAG                         TTTCTATCCATGAAACTAGCAGCTGTGAACCCCAGACTTGACTTCAACATC
genomic: TGCTCGATGAAATCATCAATTATGTACAATCTCTTCAACGACAAGTAGAGgtacagggcc ... ttgtaaacagTTTCTATCCATGAAACTAGCAGCTGTGAATCCCAGACTTGACTTCAACATC
EST: gi|110357551|gb|EC921175.1|EC921175
EST:     TGCTCGATGAAATCATCAATTATGTACAATCTCTTCAACGACAAGTAGAG                         TTTCTATCCATGAAACTAGCAGCTGTGAACCCCAGACTTGACTTCAACATC
genomic: TGCTCGATGAAATCATCAATTATGTACAATCTCTTCAACGACAAGTAGAGgtacagggcc ... ttgtaaacagTTTCTATCCATGAAACTAGCAGCTGTGAATCCCAGACTTGACTTCAACATC
EST: gi|110416436|gb|EC982418.1|EC982418
EST:     TGCTCGATGAAATCATCAATTATGTACAATCTCTTCAACGACAAGTAGAG                         TTTCTATCCATGAAACTAGCAGCTGTGAATCCCAGACTTGACTTCAACATC
genomic: TGCTCGATGAAATCATCAATTATGTACAATCTCTTCAACGACAAGTAGAGgtacagggcc ... ttgtaaacagTTTCTATCCATGAAACTAGCAGCTGTGAATCCCAGACTTGACTTCAACATC
EST: gi|110358413|gb|EC922605.1|EC922605
EST:     TGCTCGATGAAATCATCAATTATGTACAATCTCTTCAACGACAAGTAGAG                         TTTCTATCCATGAAACTAGCAGCTGTGAACCCCAGACTTGACTTCAACATC
genomic: TGCTCGATGAAATCATCAATTATGTACAATCTCTTCAACGACAAGTAGAGgtacagggcc ... ttgtaaacagTTTCTATCCATGAAACTAGCAGCTGTGAATCCCAGACTTGACTTCAACATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catatatctccatgttgctgaattcagtctaattatcgaaccactttgtaaacagTTTCTATCCATGAAACTAGCAGCTGTGAATCCCAGACTTGACTTCAACATCGACAACTTCCTAGCAAAAGAG
                          gtctaat  putative branch site (score: 3)
                                        ccacttt  putative PPT
                           tctaattat  TA-rich tract