Sequence
atgc intronic sequence ATGC exonic sequencegttgattattgctttacttgtagagatataccttgatcattaactacagctataatgcactttggtttttatgtgctcattgaacacttatcctgtgctatttcattttttgctttaactttaagtcacactatgtttcattttttcctggaatttacctggttcattatgtagtgaccggttttctgggttaaatgcagAAAGGCATCTCACTGTTCAATAGGAAACCTTCCAAGGGCATAGAATTTCTAATAAGCTCCAAGAAAATCGGTGGTTCTCCAGAAGAGGTGGCTGCTTTTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g04090.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA14G00230.1 (Glycine max), 3'ss of exon 4
gttgattattgctttacttgtagagatataccttgatcattaactacagctataatgcactttggtttttatgtgctcattgaacacttatcctgtgctatttcattttttgctttaactttaagtcacactatgtttcattttttcctg----gaatttacctggttcattatg-tagtgaccggttttctgggttaaatgcagAAAGGCATCTCACTGTTCAATAGGAAACCTTCCAAGGGCATAGAATTTCTAATAAGCTCCAAGAAAATCGGTGGTTCTCCAGAAGAGGTGGCTGCTTTTC
| | | | | | || | | | || |||| | || | | ||||| | | | || || | | ||||||||||||||||||||||||||| ||||| || ||| | |||||| | || || || |||||| | |||||| ||| ||||| ||| ||||||||||| | ||||| || |
---------------------------------------------------------------------------------------------------------tctgctcccatgaattgcatttatacataatttcgtcttcctcagctgcaaattttcatattctatgctgatgctttttttttttctgggttaaatgcagAAAGGCATATCACTTTTTAATCGAAAACCTCCAAAAGGTATTGAATTTTTGATAAGCAACAAAAAAATTGGTTGTTCTCCAGAACAAGTGGCACTGTTCC
upper sequence: Vv03s0038g04090.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G48200.1 (Glycine max), 3'ss of exon 3
gttgattattgctttacttgtagagatataccttgatcattaactacagctataatgcactttggtttttatgtgctcattgaacacttatcctgtgctatttcattttttgctttaactttaagtcacactatgtttcattttttc---ctg-gaatttacctggttcattatg-tagtgaccggttttctgggttaaatgcagAAAGGCATCTCACTGTTCAATAGGAAACCTTCCAAGGGCATAGAATTTCTAATAAGCTCCAAGAAAATCGGTGGTTCTCCAGAAGAGGTGGCTGCTTTTC
| | | | | || | | | || |||||| || ||| ||||| | | | || || | | ||| ||||||||||||||||||||||| ||||| || ||| | |||||| | ||||| || |||||| | | |||| ||| ||||| ||| ||||||||||| | ||||| || |
---------------------------------------------------------------------------------------------------------cctgctcccatgaattgcatttatacataatttcatcttcctgagctgcaaattttcatattctatgctgatgcttttttttttcctgggttaaatgcagAAAGGCATATCACTTTTTAATCGAAAACCTCCAAAGGGTATTGAATTTTTGAAAAGCAACAAAAAAATTGGTAGTTCTCCAGAACAAGTGGCACTGTTCC
upper sequence: Vv03s0038g04090.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G35380.1 (Arabidopsis thaliana), 3'ss of exon 2
gttgattattgctttacttgtagagatataccttgatcattaactacagctataatgcactttggtttttatgtgctcattgaacacttatcctgtgctatttcattttttgctttaactttaagtcacactatgtttcattttttcctggaatttacctggttcattatgtagtgaccggtt-ttctgggttaaatgcagAAAGGCATCTCACTGTTCAATAGGAAACCTTCCAAGGGCATAGAATTTCTAATAAGCTCCAAGAAAATCGGTGGTTCTCCAGAAGAGGTGGCTGCTTTTC
| | | ||| || || |||| | || || | | || | | | |||| | |||| ||| | |||||||||| ||||| |||||||||||||| || || || || | |||||||| ||||| |||||||||| ||| | || || || || || ||| | ||||
--------------------------------------------------------------------------------------------------------------------gtccagtatttacaagtccttaaatctttttttatgatatatcagtttttatgttcactgacatatagttcttggtgatttgcagAAAGGTATCTCTCTGTTCAATAGGAAGCCGTCGAAAGGTGTCGAATTTCTCATAAGTACCAAGAAAATAGGTAGCTCCCCTGAGGAAGTTGCTTCGTTTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34545314|gb|CF513546.1|CF513546EST: CAGATGCTGCCGCCTTTGAGCAACGTCGAGCTTATAAACTAGAATTCCAG AAAGGCATCTCACTGTTCAATAGGAAACCTTCCAAGGGCATAGAATTTCTA
genomic: CAGATGCTGCTGCCTTTGAGCAACGTCGAGCTTATAAACTAGAATTCCAGgttgattatt ... ttaaatgcagAAAGGCATCTCACTGTTCAATAGGAAACCTTCCAAGGGCATAGAATTTCTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcctggaatttacctggttcattatgtagtgaccggttttctgggttaaatgcagAAAGGCATCTCACTGTTCAATAGGAAACCTTCCAAGGGCATAGAATTTCTAATAAGCTCCAAGAAAATCGGTGGTTCTCCAGAAGAGGTGGCTGCTTTTC
ttcattat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttgattattgctttacttgtagagatataccttgatcattaactacagctataatgcactttggtttttatgtgctcattgaacacttatcctgtgctatttcattttttgctttaactttaagtcacactatgtttcattttttcctggaatttacctggttcattatgtagtgaccggttttctgggttaaatgcagAAAGGCATCTCACTGTTCAATAGGAAACCTTCCAAGGGCATAGAATTTCTAATAAGCTCCAAGAAAATCGGTGGTTCTCCAGAAGAGGTGGCTGCTTTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT