1 5' 3' | 2 5' 3' | 3 5' 3' |
...aggcgattgctggattgaatcctactaacctgttaaaacaagtacagtaagtatgagataaagggcataatctaacttcaactatcatccaaattctcagATTTAAAGGATGTCAAAAGCGCATGTTGTGGAGGTGGGAGGTTAAATGCATTGCTTCCTTGCTTAAAGCCTCTGGCTACTGTCTGCTCAAACCGGGATGA
species | Vitis vinifera |
transcript | Vv03s0038g03590.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
agtaagtatgagataaagggcataatctaacttcaactatcatccaaattctcagATTTAAAGGATGTCAAAAGCGCATGTTGTGGAGGTGGGAGGTTAAATGCATTGCTTCCTTGCTTAAAGCCTCTGGCTACTGTCTGCTCAAACCGGGATGA
atctaac putative branch site (score: 2)
ttctc putative PPT
ataatctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggcgattgctggattgaatcctactaacctgttaaaacaagtacagtaagtatgagataaagggcataatctaacttcaactatcatccaaattctcagATTTAAAGGATGTCAAAAGCGCATGTTGTGGAGGTGGGAGGTTAAATGCATTGCTTCCTTGCTTAAAGCCTCTGGCTACTGTCTGCTCAAACCGGGATGA
- - - ttgctgg
- - - - - - - -tgaatcc
- - - - - - - - - - - -actaacc
- - - - - - - - - - - - - - - - - aaaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -agataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcaac