Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgctataatggattcttttctcaaaattttaaagtttattatctactgttatacataatttgatgtttagctaggtgataatctaatattttgattggactttgtagGATGGTGACCCACGGCTTTCATGTTTTGGCTTGATGAAAAATAGTAGAGATGGGAAAAGTTATAGCACAAATCTTGCCTACACACCTCCGGAATATCTAA

Basic information

species Vitis vinifera
transcript Vv03s0038g03270.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g03270.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os03g04050.1 (Oryza sativa), 3'ss of exon 3
gtgctataatggattcttttctcaaaattttaaagtttattatctactgttatacataatttgatgtttagctaggtgataatctaatattttga----ttggactttgtagGATGGTGACCCACGGCTTTCATGTTTTGGCTTGATGAAAAATAGTAGAGATGGGAAAAGTTATAGCACAAATCTTGCCTACACACCTCCGGAATATCTAA
            ||   |||| ||  || ||       || | |  ||  |  ||||  ||       | | ||   | | ||||||    || |    ||    |||| || ||||||| || || |||||||| |||||| |||||||||| || || ||||| ||||||||||||||||| ||||| || |||||||| || ||| | |
----------aaatcgctttcccatgatgttgtt-cacatgaacctctccttcacatggttatccagat-gttatccgtttatctaaatcgttaatgtatttatatttgcagAATGGTGATCCTCGTCTTTCATGCTTTGGCCTGATGAAAAACAGCAGGGATGGCAAAAGTTATAGCACAAACCTTGCATATACACCTCCAGAGTATTTGA

upper sequence: Vv03s0038g03270.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os10g39670.1 (Oryza sativa), 3'ss of exon 3
gtgctataatggattcttttctcaaaattttaaagtttattatctactgttatacataatttgatgtttagctaggtgataatctaatattttgattggacttt-----gtagGATGGTGACCCACGGCTTTCATGTTTTGGCTTGATGAAAAATAGTAGAGATGGGAAAAGTTATAGCACAAATCTTGCCTACACACCTCCGGAATATCTAA
             |   |     |   |||  ||| | ||  |  | ||   |  | ||||     |      | ||  |||   ||  || | |||    ||      | || ||||||| || || || ||||| ||||| ||||||||||| || || ||||||||||||||||| ||||| || || || |||||||| |||||||| |
-------------tgagtcaagtaggctttgtaagatcatagttgattgcattcaacaattcagcatgccatcatgttgtaagaaaagtttctaattaactttcttatcgcagAATGGTGATCCTCGTCTATCATGCTTTGGTTTGATGAAAAACAGCAGGGATGGGAAAAGTTATAGTACAAACCTGGCATATACACCTCCAGAATATCTGA

upper sequence: Vv03s0038g03270.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G099598_T01 (Zea mays), 3'ss of exon 3
gtgctataatggattcttttctcaaaattttaaagtttattatctactgttatacataatttgatgtttagctaggtgataatctaatattttgattggactttgtagGATGGTGACCCACGGCTTTCATGTTTTGGCTTGATGAAAAATAGTAGAGATGGGAAAAGTTATAGCACAAATCTTGCCTACACACCTCCGGAATATCTAA
    |   |||   ||  ||       ||||| ||    ||||    |  |   || | |||  |  |     | | | ||| | |  | | | |||    |||| || ||||||| || || |||||||| |||||| |||||||||| ||||| ||||||||||| ||||||||||||||||| || |||||||| |||||| |||
tctttgcgatgacatcgattgc----gttttacagcactttatacgtttct---caaactttactaatcctgcatgggctaaacaaccaatataatttc-ttttgcagAATGGTGATCCTCGCCTTTCATGCTTTGGCCTGATGAAAAACAGTAGGGATGGGAAAAGCTATAGCACAAATCTTGCATATACACCTCCAGAATATTTAA

upper sequence: Vv03s0038g03270.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G127050_T02 (Zea mays), 3'ss of exon 3
gtgctataatggattcttttctcaaaattttaaagtttattatctactgttatacataatttgatgtttagctaggtgataatctaatattttgattggactttgtagGATGGTGACCCACGGCTTTCATGTTTTGGCTTGATGAAAAATAGTAGAGATGGGAAAAGTTATAGCACAAATCTTGCCTACACACCTCCGGAATATCTAA
    | | |||    |  ||      || ||| |  ||| | |  | ||||   || | | | ||  |     | ||||| | | |  | | | |||    | || || ||||||| || || |||||||| |||||| |||||||||| || || ||||||||||| ||||||||||| ||||| || |||||||| |||||| | |
tctttgtgatgacaacgattgc----atgttaca--ttactttgca-tgtttctcaaactgtaataatccttcatgtgatgaacaaccaatataatttc-ttctgcagAATGGTGATCCTCGTCTTTCATGCTTTGGCCTGATGAAAAACAGCAGGGATGGGAAAAGCTATAGCACAAACCTTGCATATACACCTCCAGAATATTTGA

upper sequence: Vv03s0038g03270.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G35230.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgctataatggattcttttctcaaaattttaaagtttattatctactgttatacataatttgatgtttagcta-ggtgataatctaatat-tttgattggactttgtagGATGGTGACCCACGGCTTTCATGTTTTGGCTTGATGAAAAATAGTAGAGATGGGAAAAGTTATAGCACAAATCTTGCCTACACACCTCCGGAATATCTAA
    ||| ||  ||| | ||||||| |       |||  |||| |  |||| ||    ||    ||| | | |  ||||   | | | ||| || || || |  | |||||||||||| || || || |||||||||||||||||||| || ||||| ||||| |||||||||||||||||| | || || ||||| || ||||||||||
---gtattatt-attttcttctcaaga-------gttatttatttcgtgtt-taagagatgccctgtctcgttgcggtgcctaacaagtatattggaatgaatatggtagGATGGTGATCCTCGTCTCTCATGTTTTGGCTTGATGAAGAACAGTAGGGATGGTAAAAGTTATAGCACAAATTTAGCTTATACACCACCTGAATATCTAA

upper sequence: Vv03s0038g03270.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: PP1S156_133V6.1 (Physcomitrella patens), 3'ss of exon 4
gtgctataatggattcttttctcaaaattttaaagtttattatctac-tgttatacataatttgatgtttagctaggtgataatctaatattttgattggactttgtagGATGGTGACCCACGGCTTTCATGTTTTGGCTTGATGAAAAATAGTAGAGATGGGAAAAGTTATAGCACAAATCTTGCCTACACACCTCCGGAATATCTAA
    | |  ||| || ||   |  || |      | ||  ||| |   |||||   | | | |        | ||| | ||    | ||  ||   |   | ||   ||||||| |||||||| || || ||||||||  | ||||| || || |||||||||||||| || ||||| ||||| || ||||| ||||| || ||  |||
----ttttgtgg-tttttcctttgaactagctctgcttggtatgtggatgttaactaaagtctagaaaacggttagtttat----ttatggttatctgcaatttatcagGATGGAGACCCACGTCTCTCCTGTTTTGGGCTCATGAAGAACAGCAGAGATGGGAAAAGCTACAGCACCAATCTGGCTTACACTCCTCCTGAGTACTTAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30128409|gb|CB913748.1|CB913748
EST:     GCCGTTCATTGTACCACGATCTGAATGCATATAGGGTTCTCTTTGACGAG                         GATGGCGACCCACGG
genomic: GCCGTTCATTGTACCACGATCTGAATGCATATAGGGTTCTCTTTGACGAGgtgctataat ... gactttgtagGATGGTGACCCACGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acataatttgatgtttagctaggtgataatctaatattttgattggactttgtagGATGGTGACCCACGGCTTTCATGTTTTGGCTTGATGAAAAATAGTAGAGATGGGAAAAGTTATAGCACAAATCTTGCCTACACACCTCCGGAATATCTAA
                       tgataatctaatattt  TA-rich tract