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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcatctccctctctccctccctatcctcctcctactactactctctctctctctctctctctttctctgtctcttgttttttcttcacccaccacatttttttttcctttctttacaataaacaaagatctgaggcattttctgcaactgggcatgtcgtttgttgcagCAACATATATTACATAAATGATAATCTGGACAAGAGGACATGGACTTACATCTTCGGAGCCTGCTGTGCCACCACAGTCTTTATTCCTTCATTCCACAAC

Basic information

species Vitis vinifera
transcript Vv03s0038g02140.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g02140.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os03g14080.1 (Oryza sativa), 3'ss of exon 3
gcatctccctctctccctccctatcctcctcctactactactctctctctctctctctctctttctctgtctcttgttttttcttcacccaccacatttttttttcctttctttacaataaacaaagatctgaggcattttctgcaactgggcatgtcgtttgttgcagCAACATATATTACATAAATGATAATCTGGACAAGAGGACATGGACTTACATCTTCGGAGCCTGCTGTGCCACCACAGTCTTTATTCCTTCATTCCACAAC
                                                                 |  ||  || |    | ||  | ||||   | | |   |    |  ||       |  |    | | || | | |  |  |  ||  ||    ||  || |||||||||| || ||||| || || || |||||||||||||| ||||| ||||||||||| || ||||| || || || || || || || || |||||||||
----------------------------------------------------------------gtacgtacct-gcagctactaaagccactgaagtctgaatgtactcatt-------agtatctgttttag-cgtctgttttatgtgtacaatgtgtgagt-gcagCAACATCTACTACATCAACGACAAGCTGGACAAGAGGACGTGGACCTACATCTTCGGCGCGTGCTGCGCGACGACGGTGTTCATCCCGTCGTTCCACAAC

upper sequence: Vv03s0038g02140.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G149481_T02 (Zea mays), 3'ss of exon 3
gcatctccctctctccctccctatcctcctcctactactactctctctctctctctctctctttctctgtctcttgttttttcttcacccaccacatttttttttcctttctttacaataaacaaagatctgaggcattttctgcaactgggcatgtcgtttgttg--cagCAACATATATTACATAAATGATAATCTGGACAAGAGGACATGGACTTACATCTTCGGAGCCTGCTGTGCCACCACAGTCTTTATTCCTTCATTCCACAAC
                                                                                             |  ||  ||  |   |   |  ||     |   |       |  |     | ||  |  ||| |    |      ||||||||| || ||||| || || || ||||||||| |||| ||||| ||||||||||| |||||||| ||||| || || || || || || |||||||||
------------------------------------------------------------------------------------------gtaaggttgcttgcttgctcgctcgcatggttcgccggctaactgtgtgccgcgtaagcgtacatatatactaccaaacagCAACATCTACTACATCAACGACAAGCTGGACAAGCGGACGTGGACGTACATCTTCGGCGCCTGCTGCGCCACGACGGTGTTCATCCCGTCGTTCCACAAC

upper sequence: Vv03s0038g02140.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G045057_T02 (Zea mays), 3'ss of exon 3
----------------gcatctccctctctccctccctatcctcctcctactactactctctctctctctctctctctttctctgtctcttgttttt----tcttcacccaccacatttttttttcctttctttacaataaacaaagatctgaggcattttctgcaactgggcatgtcgtttgttgcagCAACATATATTACATAAATGATAATCTGGACAAGAGGACATGGACTTACATCTTCGGAGCCTGCTGTGCCACCACAGTCTTTATTCCTTCATTCCACAAC
                || |         ||| ||  ||     |   ||| | ||            || |  ||  ||        |  |  ||     | |      | |    || |  || |  |||   | |   ||  | || ||||  ||    || | |     ||     |    |||||||||| || ||||| || || ||    |||||| |||| ||||| ||||||||||| |||||||| |||||||| || || || || || |||||||||
gtaatcatccattcatgcctacattcgcatccatcgataaaactcatatacaattaacacaatcaaagcttttcctaattaataactgcaagcattaaaagtgtagtgtaatcgatcttgtaattacgctctgatctagctacctatatatgagtgatcca-tggatcgatatatacatatatgagcagCAACATCTACTACATCAACGACAAGTATGACAAGCGGACGTGGACGTACATCTTCGGCGCCTGCTGCGCCACCACCGTGTTCATCCCCTCCTTCCACAAC

upper sequence: Vv03s0038g02140.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G11310.1 (Glycine max), 3'ss of exon 3
gcatctccctctctccctccctatcctcctcctactactactctctctctctctctctctctttctctgtctcttgttttttcttcacccaccacatttttttttcctttctttacaataaacaaagatctgaggcattttctgcaactgggcatgtcgtttgttgcagCAACATATATTACATAAATGATAATCTGGACAAGAGGACATGGACTTACATCTTCGGAGCCTGCTGTGCCACCACAGTCTTTATTCCTTCATTCCACAAC
                                                                    |   |     |    | ||    ||| | |    || |||      |||||  |    | | ||||      | || |  | |   |   ||| ||| |||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| || ||||||
-------------------------------------------------------------aagacaaggaaccaacatcacatgcatgtcccataataaccttacctgctgaaacaattcattggggtgtgag------tgtgaattttgttttaatgtt-gtt-cagCAACATATATTACATAAATGACAACCTGGACAAGAGGACTTGGACTTACATCTTCGGAGCTTGCTGTGCCACCACTGTCTTTATTCCTTCCTTTCACAAC

upper sequence: Vv03s0038g02140.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA12G03490.1 (Glycine max), 3'ss of exon 3
gcatctccctctctccctccctatcctcctcctactactactctctctctctctctctctctttctctgtctcttgttttttcttcacccaccacatttttttttcctttctttacaataaacaaagatctgaggcattttctgcaactgggcatgtcgtttgttgcagCAACATATATTACATAAATGATAATCTGGACAAGAGGACATGGACTTACATCTTCGGAGCCTGCTGTGCCACCACAGTCTTTATTCCTTCATTCCACAAC
                                                                    |   |     |    | ||    ||| | |  | || |||      |||||  |    | | ||||      | || |  | |   |   ||| ||| |||||||||||||||||||||||| || |||||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||| || ||||||
-------------------------------------------------------------aagacaagaaaccaacatcacatgcatgtcccataataatcttacctcctgcaacaattcattggggtgtgag------tgtgaatattgttttaatgtt-gtt-cagCAACATATATTACATAAATGACAACCTGGACAAGAGGACTTGGACTTACATCTTTGGAGCTTGCTGTGCCACCACTGTCTTTATTCCTTCCTTTCACAAC

upper sequence: Vv03s0038g02140.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA06G00690.1 (Glycine max), 3'ss of exon 3
gcatctccctctctccctccctatcctcctcctactactactctctctctctctctctctctttctctgtctcttgttttttcttcacccaccacatttttttttcctttctttacaataaacaaagatctgaggcattttctgcaactgggcatgtcgtttgttgcagCAACATATATTACATAAATGATAATCTGGACAAGAGGACATGGACTTACATCTTCGGAGCCTGCTGTGCCACCACAGTCTTTATTCCTTCATTCCACAAC
                                               | |||   | | |   | | | | | ||||||||| || |   |  || | | | |   ||  |||  | |  ||  |          |||  |    ||||          ||||| ||||||||||||||||||||||||||||| |||| |||||||  |||||||||||||| ||||| |||||||||||||| || ||||| ||||| |||||||||
-----------------------------------------------tttctaaatattttgctgttttttttttgttttttttttaaatagaac-tctgtgtgctctaacttagctaggaatta----------catggttattaact----------tttgt-gcagCAACATATATTACATAAATGATAATTTGGATAAGAGGAGTTGGACTTACATCTTTGGAGCATGCTGTGCCACCACTGTATTTATCCCTTCCTTCCACAAC

upper sequence: Vv03s0038g02140.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA04G00640.1 (Glycine max), 3'ss of exon 3
gcatctccctctctccctccctatcctcctcctactactactctctctctctctctctctctttctctgtctcttgttttttcttcacccaccacatttttttttcctttctttacaataaacaaagatctgaggcattttctgcaactgggcatgtcgtttgttgcagCAACATATATTACATAAATGATAATCTGGACAAGAGGACATGGACTTACATCTTCGGAGCCTGCTGTGCCACCACAGTCTTTATTCCTTCATTCCACAAC
                                                           |   |  |||| | ||  | ||| || |   |  | | |  | | | ||  || ||   |             ||| |||       ||  ||  |  | ||||| ||||||||||||||||||||||||||||| |||| |||||||| |||||||| ||||| ||||| || ||||||||||| || ||||| ||||| |||||||||
----------------------------------------------------------attcattactgttttttaatctttatttaaata--aaactcgtgtgtgctagctataacttttttgggctagctaggaatt-------acatggt-taacttttgt-gcagCAACATATATTACATAAATGATAATTTGGATAAGAGGACTTGGACTTATATCTTTGGAGCATGTTGTGCCACCACTGTATTTATCCCTTCCTTCCACAAC

upper sequence: Vv03s0038g02140.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT2G21050.1 (Arabidopsis thaliana), 3'ss of exon 3
gcatctccctctctccctccctatcctcctcctactactactctctctctctctctctctctttctctgtctcttgttttttcttcacccaccacatttttttttcctttctttacaataaacaaagatctgaggca-ttttctgcaactgggcatgtcgtttgttgcagCAACATATATTACATAAATGATAATCTGGACAAGAGGACATGGACTTACATCTTCGGAGCCTGCTGTGCCACCACAGTCTTTATTCCTTCATTCCACAAC
                                                                                          ||   || |     | ||||||| |  | ||  | |    ||| | | |  | |     |  |    |   |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| || ||||| |||||||||||||||||||| |||||||||
----------------------------------------------------------------------------------------gtactttatataccaattctttcttcaggaaaatgagactaatgatgtagtggtttaatggtaagtgaatgtgttgttgcagCAACATATATTACATAAATGATAATCTGGACAAGAGGACATGGACATACATATTTGGAGCATGTTGTGCAACCACAGTCTTTATTCCTTCCTTCCACAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaataaacaaagatctgaggcattttctgcaactgggcatgtcgtttgttgcagCAACATATATTACATAAATGATAATCTGGACAAGAGGACATGGACTTACATCTTCGGAGCCTGCTGTGCCACCACAGTCTTTATTCCTTCATTCCACAAC
     aaacaaa  TA-rich tract