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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acaccttctttgatttatttttatttttatttttatttacataaatcaatcattaaatcacgatgttcctaatatttctactttcccttgaattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCATTAACAGATCGGATTGAGATATCTGCTCAGAACTCTTGGGTTGGGAAAGG

Basic information

species Vitis vinifera
transcript Vv03s0038g01780.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g01780.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os09g36450.1 (Oryza sativa), 3'ss of exon 3
-----------------------------------------------------------acacct-tctttgatttatttttatttttatttttatttacataaatcaatcatt---aaatcacgat-gttcctaatatttctactttcc---cttgaatta-----------------tacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCATTAACAGATCGGATTGAGATATCTGCTCAGAACTCTTGGGTTGGGAAAGG
                                                           |    | | |||||||  || ||   |   || || || |   ||||| ||| |    || ||    | | | | | | | | |  ||| |   ||| |||||                 | |||||||||| || ||||| |||||  ||||  |||| ||||| ||||| ||| |||| ||||| |||||| |||||||||||||   |||| |||| |||||
gtaagcacgttttattcatctatgcatgattctcttcctctctatacacactgtgttagatgtgtgtatttgattggttctttcatgccttctttttcatccaaatccatcctccggaattctttttagcttccactgtctatctttttctaccttcaattaacttgctgtggcaatactgcagATGTTGTGGTTGCACCACCATTCATTTATATTGATCAGGTTAAGAACTCACTAACTGATCGTATTGAGGTATCTGCTCAGAATGTTTGGATTGGAAAAGG

upper sequence: Vv03s0038g01780.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G002807_T01 (Zea mays), 3'ss of exon 3
acaccttctttgatttatttttatttttatttttatttacataaatcaatcattaaatcacgatgttcctaatatttctactttcccttg---aattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCATTAACAGATCGGATTGAGATATCTGCTCAGAACTCTTGGGTTGGGAAAGG
     |     || |||| |      |||| |     |       |   |  ||  |  |  | |     || | |  |   |  | ||    || | | |||||||||| || |||||||||||| | ||  |||| ||||| ||||||||| |||| | ||| |||||| | |||||||||||    ||| |||| |||||
---agtagagggaattatctaagaaattatatgccactttgctgcttgtttcttgcagaataaagcaatcaaaactaatgtgtggcattatgcaaatctgcagATGTTGTGGTGGCACCTCCATTTATCTATATTGATCAGGTTAAGAATTCACTAACTGGTCGCATTGAGGTTTCTGCTCAGAATGTGTGGATTGGAAAAGG

upper sequence: Vv03s0038g01780.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G20930.1 (Glycine max), 3'ss of exon 3
--acaccttctttg-atttatttttatttttatttttatttacataaatcaatcattaaatcacgatgttcctaatatttctactttcccttgaattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCATTAACAGATCGGATTGAGATATCTGCTCAGAACTCTTGGGTTGGGAAAGG
  | ||         |||  |  | |  ||| || ||  | |  | | |   || ||  |||  | |  | |||||  || || |||   | ||    ||||||||||||||| |||||||| ||||| ||| | || ||||| || || ||| | |||||| ||||||| || ||||| ||||| |||||||| || |||||
ttatactagaaacatattcgtaataacatttgttatttgtcagtttattttgtctttttatcctgtt--ttctaatccttttaatttttgt-gagaagtacagATGTTGTTGTTGCACCTCCCTTTGTGTACATCGATCAGGTGAAAAACTCAATTACAGATAGGATTGAAATTTCTGCCCAGAATTCTTGGGTGGGAAAAGG

upper sequence: Vv03s0038g01780.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G06740.1 (Glycine max), 3'ss of exon 3
acaccttctttgatttatttttatttttattt-ttatttacataaatcaatcattaaatcacgatgttc-ctaatatttctactttcccttgaattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCATTAACAGATCGGATTGAGATATCTGCTCAGAACTCTTGGGTTGGGAAAGG
            |  |||| ||| |   || | ||||||       |   |  |    | |   ||||  |||||  || || |||   | ||    ||||||||||||||| |||||||| ||||| ||| | || ||||| || || ||| | |||||| ||||||| || ||||| ||||| |||||||| || |||||
-ttatactagaaacatattcttaatagcatatgttatttgtcagtttattttgtctttttatcctgttttctaatccttttaatttttgt-gagaagtacagATGTTGTTGTTGCACCTCCTTTTGTGTACATCGATCAGGTGAAAAACTCAATTACAGATAGGATTGAAATTTCTGCCCAGAATTCTTGGGTGGGAAAAGG

upper sequence: Vv03s0038g01780.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G34300.1 (Glycine max), 3'ss of exon 3
-acacc-ttctttgatttatttttatttttatttttatttacataaatcaatcattaaatcacgatgttcctaatatttctactttcccttgaattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCATTAACAGATCGGATTGAGATATCTGCTCAGAACTCTTGGGTTGGGAAAGG
  ||   || | | |    ||    | ||| ||  || |    |||||  ||| |  |     | |  ||||||  ||||   | |     |||   |||||||||||| || |||||||| ||  | ||| | || || || || || ||| | || || |||||||| |||||||| ||||| ||||||||||| |||||
tgcattattttctaaacacttccggtctttcttgataatcttgtaaatttatcttatatatttggtcatcctaagctttcccatgttgtgggaa--gtacagATGTTGTCGTTGCACCTCCCTTCCTCTACATCGATCAAGTGAAAAACTCACTCACTGAGCGGATTGAAATATCTGCCCAGAATTCTTGGGTTGGAAAAGG

upper sequence: Vv03s0038g01780.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT2G21170.2 (Arabidopsis thaliana), 3'ss of exon 2
-----------acaccttctttgatttatttttatttttatttttatttacataaatcaatcattaaatc-acgatgttcctaatatttctactttcccttgaattat---------acagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCATTAACAGATCGGATTGAGATATCTGCTCAGAACTCTTGGGTTGGGAAAGG
             || || |   ||   |     | | ||| |||       ||  || ||   | | |  |  |||  ||| || ||     |||    | ||| ||           ||||||||||||  ||||||||||||| ||| | |||||||| ||    || || ||||| || ||||| ||||| | ||||||||||||||||||||||||
gtgagtttctgctactttttccaatgagtcaagctctctatatttggagcattatttccatttctgatttgaaaatggacctcatgttgaccatttgttctaaatgatcgtttttgcgtagATGTTGTTGTGTCACCTCCATTTGTCTACATCGACCAGGTCAAATCCTCGTTGACAGACCGTATTGACATATCAGGTCAGAACTCTTGGGTTGGGAAAGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110730538|gb|EE107734.1|EE107734
EST:     CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCG                         ATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
genomic: CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCGgtaagataaa ... aattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
EST: gi|34545318|gb|CF513550.1|CF513550
EST:     CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCG                         ATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
genomic: CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCGgtaagataaa ... aattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
EST: gi|30321676|gb|CD004938.1|CD004938
EST:     CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCG                         ATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATT
genomic: CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCGgtaagataaa ... aattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATT
EST: gi|110713056|gb|EE088645.1|EE088645
EST:     CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCG                         ATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
genomic: CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCGgtaagataaa ... aattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
EST: gi|110692798|gb|EE068468.1|EE068468
EST:     CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCG                         ATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
genomic: CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCGgtaagataaa ... aattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
EST: gi|27580841|gb|CB003536.1|CB003536
EST:     CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCG                         ATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
genomic: CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCGgtaagataaa ... aattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
EST: gi|352798567|gb|FQ480592.1|FQ480592
EST:     CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCG                         ATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
genomic: CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCGgtaagataaa ... aattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
EST: gi|161721774|gb|FC070490.1|FC070490
EST:     CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCG                         ATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
genomic: CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCGgtaagataaa ... aattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
EST: gi|27580521|gb|CB003216.1|CB003216
EST:     CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCG                         ATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
genomic: CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCGgtaagataaa ... aattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
EST: gi|110713655|gb|EE089776.1|EE089776
EST:     CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCG                         ATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
genomic: CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCGgtaagataaa ... aattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
EST: gi|351015203|gb|FQ445487.1|FQ445487
EST:     CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCG                         ATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
genomic: CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCGgtaagataaa ... aattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
EST: gi|351055931|gb|FQ453392.1|FQ453392
EST:     CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCG                         ATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
genomic: CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCGgtaagataaa ... aattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
EST: gi|161719285|gb|FC068261.1|FC068261
EST:     CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCG                         ATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
genomic: CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCGgtaagataaa ... aattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
EST: gi|351042327|gb|FQ442794.1|FQ442794
EST:     CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCG                         ATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
genomic: CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCGgtaagataaa ... aattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
EST: gi|71855995|gb|DT005050.1|DT005050
EST:     CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCG                         ATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
genomic: CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCGgtaagataaa ... aattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
EST: gi|110687322|gb|EE064629.1|EE064629
EST:     CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCG                         ATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
genomic: CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCGgtaagataaa ... aattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
EST: gi|33406430|gb|CF212057.1|CF212057
EST:     CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCG                         ATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
genomic: CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCGgtaagataaa ... aattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
EST: gi|161715107|gb|FC064265.1|FC064265
EST:     CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCG                         ATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
genomic: CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCGgtaagataaa ... aattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
EST: gi|71860392|gb|DT009447.1|DT009447
EST:     CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCG                         ATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
genomic: CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCGgtaagataaa ... aattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
EST: gi|351038588|gb|FQ464454.1|FQ464454
EST:     CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCG                         ATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
genomic: CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCGgtaagataaa ... aattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
EST: gi|294963826|gb|GW836701.1|GW836701
EST:     CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCG                         ATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
genomic: CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCGgtaagataaa ... aattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
EST: gi|30321727|gb|CD004989.1|CD004989
EST:     CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCG                         ATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
genomic: CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCGgtaagataaa ... aattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
EST: gi|110684631|gb|EE062130.1|EE062130
EST:     CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCG                         ATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
genomic: CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCGgtaagataaa ... aattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
EST: gi|351044839|gb|FQ449093.1|FQ449093
EST:     CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCG                         ATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
genomic: CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCGgtaagataaa ... aattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
EST: gi|27578848|gb|CB001543.1|CB001543
EST:     CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCG                         ATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
genomic: CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCGgtaagataaa ... aattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
EST: gi|110705429|gb|EE082267.1|EE082267
EST:     CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCG                         ATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
genomic: CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCGgtaagataaa ... aattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
EST: gi|294966365|gb|GW837616.1|GW837616
EST:     CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCG                         ATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
genomic: CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCGgtaagataaa ... aattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
EST: gi|110720871|gb|EE097170.1|EE097170
EST:     CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCG                         ATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
genomic: CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCGgtaagataaa ... aattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
EST: gi|352790810|gb|FQ478533.1|FQ478533
EST:     CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCG                         ATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
genomic: CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCGgtaagataaa ... aattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
EST: gi|56408461|gb|CX016713.1|CX016713
EST:     CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCG                         ATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
genomic: CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCGgtaagataaa ... aattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
EST: gi|351036824|gb|FQ459346.1|FQ459346
EST:     CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCG                         ATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
genomic: CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCGgtaagataaa ... aattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
EST: gi|71862083|gb|DT011138.1|DT011138
EST:     CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCG                         ATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
genomic: CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCGgtaagataaa ... aattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
EST: gi|110721976|gb|EE097800.1|EE097800
EST:     CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCG                         ATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT
genomic: CAGTAAGCTTGTTTCTGACTTGAACAGTGCAAAATTGGAGGCTGATGTCGgtaagataaa ... aattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaatcattaaatcacgatgttcctaatatttctactttcccttgaattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCATTAACAGATCGGATTGAGATATCTGCTCAGAACTCTTGGGTTGGGAAAGG
                     tcctaat  putative branch site (score: 2)
                        taatatttctacttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
acaccttctttgatttatttttatttttatttttatttacataaatcaatcattaaatcacgatgttcctaatatttctactttcccttgaattatacagATGTTGTTGTAGCACCTCCATTTGTTTACCTTGACCAGGTAAAGAATTCATTAACAGATCGGATTGAGATATCTGCTCAGAACTCTTGGGTTGGGAAAGG

-caccttc
- - - - - - - - - - - - - - - - - - - - - aaatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - aaatcac