1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aacacaagttttaaatatttttttgttttctatttaagaatcggagtgagcatcatttttcttaatttttatttcaataaatccattatttttatgcaagGTTTTGAGCAATGGTAAGTACAAGAGTGTTTTGCATCGAGCGGTGGTGAACAACAAAACCACTAGGATATCATTGGCTCTTTCAAATGGACCATTGCTAG
species | Vitis vinifera |
transcript | Vv03s0017g00830.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGAATCCAATCCCCAACTCCATTTTGGTTAACACAGGCGAACATCTTGAG GTTTTGAGCAATGGTAAGTACAAGAGTGTTTTGCATCEST: gi|30132137|gb|CB917476.1|CB917476
genomic: TGAATCCAATCCCCAACTCCATTTTGGTTAACACAGGCGACCATCTTGAGgtaccttcct ... tttatgcaagGTTTTGAGCAATGGTAAGTACAAGAGTGTTTTGCATC
EST: TGAATCCAATCCCCAACTCCATTTTGGTTAACACAGGCGACCATCTTGAG GTTTTGAGCAATGGTAAGTACAAGAGTGTTTTGCATCGAGCGGTGGTGAAC
genomic: TGAATCCAATCCCCAACTCCATTTTGGTTAACACAGGCGACCATCTTGAGgtaccttcct ... tttatgcaagGTTTTGAGCAATGGTAAGTACAAGAGTGTTTTGCATCGAGCGGTGGTGAAC
gtgagcatcatttttcttaatttttatttcaataaatccattatttttatgcaagGTTTTGAGCAATGGTAAGTACAAGAGTGTTTTGCATCGAGCGGTGGTGAACAACAAAACCACTAGGATATCATTGGCTCTTTCAAATGGACCATTGCTAG
tcttaat putative branch site (score: 3)
ttattttt putative PPT
atttttcttaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacacaagttttaaatatttttttgttttctatttaagaatcggagtgagcatcatttttcttaatttttatttcaataaatccattatttttatgcaagGTTTTGAGCAATGGTAAGTACAAGAGTGTTTTGCATCGAGCGGTGGTGAACAACAAAACCACTAGGATATCATTGGCTCTTTCAAATGGACCATTGCTAG
-acacaag
- - - - - - - - - - - - - - - - - - - - - - - - agcatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatcca