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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttacagagatgattttgttttgggatttttggtttttgcaattagtttgtgatttctttatatgtttgttttatgctgttgattcagTTACTATGCAAGCACAGAAGGAGGCTCCTTCTGATCTGCACTGCAAGGACAAGTTTCTCCTTCAGAGTGCAGTTGTCACTGCTGGCACGAGCCAAACGGA

Basic information

species Vitis vinifera
transcript Vv02s0154g00500.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0154g00500.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA01G41900.1 (Glycine max), 3'ss of exon 3
------gtacttacagagatgattttgttttgggatttttggtttttgcaat-tagtttgtgatttc---tttatatgtttgttttatgctgt-tgattcagTTACTATGCAAGCACAGAAGGAGGCTCCTTCTGATCTGCACTGCAAGGACAAGTTTCTCCTTCAGAGTGCAGTTGTCACTGCTGGCACGAGCCAAACGGA
       |  || |  |    |  |    ||  |  |    |       ||| || ||| | ||||    |  ||   || ||  |||   || |  | ||||||| |||||||| || ||||| |||||  ||||| |||| ||||||||||||||||| ||||| || | |   ||   || ||| || | |  || |||
gtgagcctctttgcctaacacacctaaacttttg--tgccagcgagaaaaatgtaatttattatttttaatcaatggcttggtgatatttggtattttacagTTACCATGCAAGCGCAAAAGGATGCTCCGGCTGATATGCAATGCAAGGACAAGTTTCTTCTTCAAAGCGTAAAAGTAGATGATGGAACCACCGCAAAGGA

upper sequence: Vv02s0154g00500.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G03480.2 (Glycine max), 3'ss of exon 3
--------gtacttacagagatgattt----tgttttgggatttttggtttttgcaat--tagtttgtgatttc---tttatatgtttgttttatgctgt-tgattcagTTACTATGCAAGCACAGAAGGAGGCTCCTTCTGATCTGCACTGCAAGGACAAGTTTCTCCTTCAGAGTGCAGTTGTCACTGCTGGCACGAGCCAAACGGA
        | |  ||||   ||  | |    |  | |       ||  ||| |  |||  || ||| | ||||    |  ||   || ||  |||    | |  | ||||||| |||||||| || ||||| |||||  ||||| |||| ||||||||||||||||| ||||| || | |   ||   || ||| || | |  || |||
gtactaatgcaaatacaacaatagtgtgcattaatatatatccatttatttgtttaatagtaatttattattttgaatcaatggcttggtgatatttgatattttacagTTACCATGCAAGCGCAAAAGGATGCTCCGGCTGATATGCAATGCAAGGACAAGTTTCTTCTTCAAAGCGTAAAAGTAGATGATGGAACCACCGCAAAGGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttgcaattagtttgtgatttctttatatgtttgttttatgctgttgattcagTTACTATGCAAGCACAGAAGGAGGCTCCTTCTGATCTGCACTGCAAGGACAAGTTTCTCCTTCAGAGTGCAGTTGTCACTGCTGGCACGAGCCAAACGGA
                                            tgttgat  putative branch site (score: 4)
                   atttctttatatgttt  TA-rich tract