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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgagagaatcttatattcctaatattaagtgttcaaggattttattgcttctttttgccccttcatatgtatatatgtatgttcgtcttttgggtgccgtcagcgtctgatctctgcattttgttagGTTTATGAGTTGGTAGGACTAAAGGAACTCTATTATGCGGGCAGTCATGGAATGGACATCATGGGCCCAGCCAGATACACAGCCTGCAATGACCATTCAA

Basic information

species Vitis vinifera
transcript Vv02s0154g00110.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0154g00110.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G12430.1 (Arabidopsis thaliana), 3'ss of exon 5
gtatttgagagaatcttatattcctaatattaagtgttcaaggattttattgcttctttttgccccttcatatgtatatatgtatgttcgtctt-ttgggtgccgtcagcgtctgatctctgcattttgttagGTTTATGAGTTGGTAGGACTAAAGGAACTCTATTATGCGGGCAGTCATGGAATGGACATCATGGGCCCAGCCAGATACACAGCCTGCAATGACCATTCAA
                                                          |     |||  |    | ||      || | ||    ||| || |    || || |  | | ||   | ||  |||||||| |||||||||||||||  ||||| ||||| ||||| ||||||||||||||||| |||    |  |        |    ||     |     |  
---------------------------------------------------------gtaaagtcctaaaccgttgtaatcaagtgattgtaaagttgagtactcatagagtttt-tttttgttatatggcagGTTTATCAGTTGGTAGGACTAACAGAACTTTATTACGCGGGTAGTCATGGAATGGACATAATGACTTCTTCTGATGGTCCGAATTGTTTCAAATCCACTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71858272|gb|DT007327.1|DT007327
EST:     TCGCAAAGTGTTTCCCAACAGCAATCATTAGTGGAAGAAGCCGTGACAAG                         GTTTATGAGTTGGTAGGACTAAAGGAACTCTATTATGCGGGCAGTCATGG
genomic: TCGCAAAGTGTTTCCCAACAGCAATCATTAGTGGAAGAAGCCGTGACAAGgtatttgaga ... attttgttagGTTTATGAGTTGGTAGGACTAAAGGAACTCTATTATGCGGGCAGTCATGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgtatgttcgtcttttgggtgccgtcagcgtctgatctctgcattttgttagGTTTATGAGTTGGTAGGACTAAAGGAACTCTATTATGCGGGCAGTCATGGAATGGACATCATGGGCCCAGCCAGATACACAGCCTGCAATGACCATTCAA
                                gtctgat  putative branch site (score: 4)
                                              ttttgtt  putative PPT
                                             attttgtta  TA-rich tract