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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttgatccatttctgacccctgatttaggtgatcttgctgttgcttgttcaatatcacatataagctttgttaatgcagTACAGAAACAGTTAATTTACTCAGAACTGAAGGTCAGGTGAAGGTTGGAGGTACACTTGTATGTGTTTCTGGTGCCATATTAATGGTTCTGTTTCGAGGC

Basic information

species Vitis vinifera
transcript Vv02s0087g00880.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0087g00880.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G09540.1 (Glycine max), 3'ss of exon 3
-----------gtaa--gtttgatccatttctgacccctgatttaggtgatcttgctgttgcttg---ttcaatatcacatataagctttgttaatgcagTACAGAAACAGTTAATTTACTCAGAACTGAAGGTCAGGTGAAGGTTGGAGGTACACTTGTATGTGTTTCTGGTGCCATATTAATGGTTCTGTTTCGAGGC
             ||   || ||    |   |   |    | |||      |   |     | |    |    | |  | ||  |  |||  |  ||||| | ||||| ||| || || ||||||  |||||||  ||  ||||||||||| || ||| | |||||||| |||||||||||||||||| | | ||| || 
gacacaaatgcacaatcattggaaatgtggatattcttgaaattattcagacacaccaggacataaaataatgtgttgcttaataaatttactcttgcagCATAGAAAAAGTGAACTTGCTCAGATATGAAGGTGTGGCAAAGGTTGGAGGAACGCTTATTTGTGTTTCAGGTGCCATATTAATGGTTTTCTATCGTGGT

upper sequence: Vv02s0087g00880.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G09520.1 (Glycine max), 3'ss of exon 3
------------------------------------------------------------------------------------------------gtaagtttgatccatttctgacccctgatttaggtgatcttgctgttgct-tgttcaatatcacatataagctttgttaatgcagTACAGAAACAGTTAATTTACTCAGAACTGAAGGTCAGGTGAAGGTTGGAGGTACACTTGTATGTGTTTCTGGTGCCATATTAATGGTTCTGTTTCGAGGC
                                                                                                | |    || |  || |       || ||| || |   || |    | |  |  ||  ||||   ||||| | || || |||||||||||||| ||| || |||||||||  ||| |||| ||  || |||||||| ||  || | ||||| |||||||||||||| |||||| ||| ||| || 
gtcagtttcatttcacttgtatcatttatcaatttcaagttgtatgtgcgtgcatcctagaactcaaaaacacaaaggcatgcactcacttgcagtgcagaaatg-tgtatattaataaacttattcagatacactgggacatacagtaatctgtatc-tgtataaacctt-ttcatgcagTACAGAAAGAGTGAACTTACTCAGATATGATGGTCTGGCAAAAGTTGGAGGAACTATTATCTGTGTCTCTGGTGCCATATTTATGGTTTTGTATCGTGGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaggtgatcttgctgttgcttgttcaatatcacatataagctttgttaatgcagTACAGAAACAGTTAATTTACTCAGAACTGAAGGTCAGGTGAAGGTTGGAGGTACACTTGTATGTGTTTCTGGTGCCATATTAATGGTTCTGTTTCGAGGC
                                            tgttaat  putative branch site (score: 3)
                                         ctttgtt  CT-rich tract
                          aatatcacatataa  TA-rich tract