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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttcctcattcggacctgtaattacttccttgaaatatcacttttccacatattctatgtcaattttcaagactgttaaggaagtttgaaattgttgttatagGTGCAATGGACACCAAGTTATTGGAGGCGTTGTATTGGAGAGGTGTTCCAGTCTTTGATATGGGCAGCCACATGAGCACAATAGATGTTGGATGGGGAAC

Basic information

species Vitis vinifera
transcript Vv02s0087g00740.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0087g00740.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA16G08350.2 (Glycine max), 3'ss of exon 2
gtaggt-tcctcattcggacctgtaattacttccttgaaatat-cactttt--ccacatattctatgtcaattttcaagactgttaag---gaagtttgaaattgttgttatagGTGCAATGGACACCAAGTTATTGGAGGCGTTGTATTGGAGAGGTGTTCCAGTCTTTGATATGGGCAGCCACATGAGCACAATAGATGTTGGATGGGGAAC
||  |  ||    ||     ||    |||  |     | |||| || |  |     | || |  |  |  || | ||  | | |   |   ||| |||||||      || ||||||||||||||||||| |||||||||||  ||||||||| |||  | ||||| ||||| ||||||||||| ||||||||| | |||||||| |||||  |
gtgagcatctctgtttaagtcttgttttatctgtcatatatatgcagtagtgatgccttactagaaatgcatatccagtattttgttgtttgaattttgaaacctaacttttagGTGCAATGGACACCAAATTATTGGAGGCACTGTATTGGAAAGGGATACCAGTTTTTGACATGGGCAGCCATATGAGCACAGTTGATGTTGGCTGGGGTTC

upper sequence: Vv02s0087g00740.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA16G20730.1 (Glycine max), 3'ss of exon 3
--------------gtaggttcctcatt--cggacctgta-attacttccttgaaatatcacttttccacatattctatgtcaattttcaagactgttaaggaagtttgaaattgttgttatagGTGCAATGGACACCAAGTTATTGGAGGCGTTGTATTGGAGAGGTGTTCCAGTCTTTGATATGGGCAGCCACATGAGCACAATAGATGTTGGATGGGGAAC
               || ||      ||  | | | |||| |||| |     | | |    | || | | | || | || || | | |   |  ||||   ||| |||||||      || ||||||||||||| ||||| ||| |||||||  | ||||||| |||  | ||||| ||||| ||||||||||| ||||||||| |||||||||| |||||  |
gtgagcatctctgtttaagtcttgttttatctgtcatgtatattattatgcagtagtgatgccttactagaaatgc-atatccagtattttg-ttgttt--gaattttgaaacctacattttagGTGCAATGGATACCAAATTAGTGGAGGCACTCTATTGGAAAGGGATACCAGTTTTTGACATGGGCAGCCATATGAGCACAGTAGATGTTGGCTGGGGGTC

upper sequence: Vv02s0087g00740.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA01G35690.1 (Glycine max), 3'ss of exon 3
--gtaggttcctcattcggacctgtaattacttccttgaaatatcacttttccacatattctatgtcaattttcaagactgttaaggaagtttgaaattgttgttatagGTGCAATGGACACCAAGTTATTGGAGGCGTTGTATTGGAGAGGTGTTCCAGTCTTTGATATGGGCAGCCACATGAGCACAATAGATGTTGGATGGGGAAC
   |  |||  |  ||  |   ||||||| |       | | ||  | | ||    |||| | |  || ||     ||||    |||    |  ||||     || ||||||||||||| |||||||||||||||||| | ||||||| |||  | ||||| ||||| ||||||||||| ||||| |||   |||||||| |||||  |
tcatgtgttttt-gttgagttttgtaattgcccttgctagagat-gcgtatctg-gtattgtgta-cagtt-----gactaaagagggttctgaaaatctaccttttagGTGCAATGGATACCAAGTTATTGGAGGCGCTTTATTGGAAAGGGATACCAGTTTTTGACATGGGCAGCCATATGAGTACAGATGATGTTGGCTGGGGGTC

upper sequence: Vv02s0087g00740.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G09650.1 (Glycine max), 3'ss of exon 1
-----------------------gtaggttcctc-attcggacctgtaattacttccttgaaatatcacttttccacatat-tctatgtcaattttcaa--gactgttaaggaagtttgaaattgttgttatagGTGCAATGGACACCAAGTTATTGGAGGCGTTGTATTGGAGAGGTGTTCCAGTCTTTGATATGGGCAGCCACATGAGCACAATAGATGTTGGATGGGGAAC
                        ||  || ||| ||   |  || |  ||   |  |  || |  || | ||  | ||   | | ||  | | | ||   ||||   ||||    |  ||||     || ||||||||||||| | |||||||||||||||| | ||||||| |||  | || || ||||| ||||||||||| ||||| |||   |||||||| |||||  |
gtgagtctcacgatttaagccttctatttttctctatcatgtgcttttgttgagttttgtaattgccattgttagagatgcgtatctggtagtgtacagttgactaaaaagggttctgaaaatctaccttttagGTGCAATGGATATCAAGTTATTGGAGGCGCTTTATTGGAAAGGGATACCGGTTTTTGACATGGGCAGCCATATGAGTACAGATGATGTTGGCTGGGGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catattctatgtcaattttcaagactgttaaggaagtttgaaattgttgttatagGTGCAATGGACACCAAGTTATTGGAGGCGTTGTATTGGAGAGGTGTTCCAGTCTTTGATATGGGCAGCCACATGAGCACAATAGATGTTGGATGGGGAAC
                                        aaattgttgttata  TA-rich tract