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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatgctaatatattattatattttgtgatggtcacttttccagtattttctttgtatcattcaatataagttgaatttttttttatacctatagGTTCTGGATGAAATTCACCAGCAATCTGTGGTCTTATCGTCCCGACCTTCTGTATCTTCTATTGGTTCTGTTCCTGCTCCAAATGAAGTTGTAGAATCTT

Basic information

species Vitis vinifera
transcript Vv02s0087g00420.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0087g00420.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G135909_T01 (Zea mays), 3'ss of exon 3
gtgatgctaatatattattatattttgtgatggtc-acttttccagtattttctttgtatcattcaatataagttgaattttttt--ttat-acctatagGTTCTGGATGAAATTCACCAGCAATCTGTGGTCTTATCGTCCC---GACCTTCTGTATCTTCTATTGGTTCTGTTCCTGCTCCAAATGAAGTTGTAGAATCTT
 |  | | ||| ||  |||| ||| | |  ||| | |       ||| || |  |||  |     |   ||| ||| ||  || |  |||| || |  |||||||||||||||||||||| |||||||  |  ||||||||     |||| ||  | ||||| ||||| || |||||||||||||  ||  |||| ||     
ttagtccaaatctaggattacattcttttttggacgaaggcaatagttttgttcttgactggaggatactaacttgcatccttatggttatgactttcagGTTCTGGATGAAATTCACCACCAATCTGCCGCATTATCGTCATCAAGACCATCATTTTCTTCAATTGGATCCGTTCCTGCTCCAAGGGAGATTGTTGAGC---

upper sequence: Vv02s0087g00420.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G060999_T01 (Zea mays), 3'ss of exon 3
-------------------------------------------------------------------------------------gtgatgctaatatattattatattttgtgatggtcacttttccagtattttctttgtatcattcaata---taagttgaattttttt--ttat-acctatagGTTCTGGATGAAATTCACCAGCAATCTGTGGTCTTATCGTCCC---GACCTTCTGTATCTTCTATTGGTTCTGTTCCTGCTCCAAATGAAGTTGTAGAATCTT
                                                                                      | |     ||| |  |     |  |   ||  | |  ||   |||| | |  |||  | |   |  |   ||| ||| ||  || |  |||| || |  |||||||||||||||||||||| |||||||  |  ||||||||     ||||  |  | ||||| ||||| ||||||||||||||||  ||  |||| ||     
gtacgttgtgcaaatatacgtactgcctctgtccaaaaaatgattgtaattctcgcttttaataagtcaatcaatatcaagtttgatcaaatagatacaaaaggtactaataatatcattagattaatagtaatgttcttgactgaagaaggatactaacttgcatccttgtggttattactttcagGTTCTGGATGAAATTCACCACCAATCTGCTGCGTTATCGTCATCAAGACCAGCGTTTTCTTCAATTGGATCTGTTCCTGCTCCAAGGGAGATTGTTGAGC---

upper sequence: Vv02s0087g00420.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA01G35490.1 (Glycine max), 3'ss of exon 3
gtgatgctaatatattattatattttgtgatggtcacttttccagtatt--ttctttgtatcattcaatataagttgaatttttttttataccta---tagGTTCTGGATGAAATTCACCAGCAATCTGTGGTCTTATCGTCCCGACCTTCTGTATCTTCTATTGGTTCTGTTCCTGCTCCAAATGAAGTTGTAGAATCTT
              | | |  | | |  | || |  || |||  ||  |  ||| || ||| |||  ||| ||||||||| ||| |  |||  |    |||||||||||||||||||||||||||||| |||| ||||| || || |||||||| || ||||| |||||||||||||| || ||||||||||| ||||| |
-------------gtaagttcaatgtacggtgttagctgttctggtggtcattcattttataatt--atacaagttgaatatttgtacatattttaattagGTTCTGGATGAAATTCACCAGCAATCTATGGTTTTATCTTCTCGCCCTTCTGTGTCATCTATCGGTTCTGTTCCTGCACCTAATGAAGTTGTGGAATCCT

upper sequence: Vv02s0087g00420.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA09G35060.1 (Glycine max), 3'ss of exon 5
gtgatgctaatatattattatattttgtgatggtcacttttccagtattttctttgtatcattcaatataagttgaatttttttttataccta---tagGTTCTGGATGAAATTCACCAGCAATCTGTGGTCTTATCGTCCCGACCTTCTGTATCTTCTATTGGTTCTGTTCCTGCTCCAAATGAAGTTGTAGAATCTT
          ||  ||   ||    |||| | ||   | |    |   |   ||| ||  |||  ||| ||||||||| ||| |  |||  |    ||||||||||||||||||||||||||||||||||| ||||| || || |||||||| || ||||| ||||| |||||||| || ||||| ||||| ||||| |
---------gtaagtt-caatgcactgtgttagttgttctggtggccatcgttttata--att--atacaagttgaatatttgtacatattttaattagGTTCTGGATGAAATTCACCAGCAATCTGTGGTTTTATCATCTCGCCCTTCTGTGTCATCTATCGGTTCCGTTCCTGCACCTAATGACGTTGTGGAATCCT

upper sequence: Vv02s0087g00420.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA16G08260.1 (Glycine max), 3'ss of exon 6
gtgatgctaatatattattatatt-ttgtgatggtcacttttccagtattttctttgtatcattcaatataagttgaatttttttttatacctatagGTTCTGGATGAAATTCACCAGCAATCTGTGGTCTTATCGTCCCGACCTTCTGTATCTTCTATTGGTTCTGTTCCTGCTCCAAATGAAGTTGTAGAATCTT
|| ||  |||  |  | ||   ||  | || |      |  ||    | | | ||| ||   ||  | ||   ||| |  | |||| ||     |||||||| |||||||||||||| |||||||| || ||||| ||||| || ||||||||||||||||| ||||||||||| || ||||| ||||| || || |
gtaattttaaagtgctgtttagttactctggtttctgatgatcactaactatatttttactgtttga-atcttttgtacatattttaat-----tagGTTCTAGATGAAATTCACCACCAATCTGTTGTTTTATCTTCCCGCCCATCTGTATCTTCTATTGGATCTGTTCCTGCACCTAATGATGTTGTCGATTCCT

upper sequence: Vv02s0087g00420.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA16G17110.1 (Glycine max), 3'ss of exon 3
--------gtgatgctaatatattattatattttgtgatggtcacttttccagtattttctttgtatcattcaatataagttgaatttttttttatacctatagGTTCTGGATGAAATTCACCAGCAATCTGTGGTCTTATCGTCCCGACCTTCTGTATCTTCTATTGGTTCTGTTCCTGCTCCAAATGAAGTTGTAGAATCTT
          | ||||  |  |||| | |  ||| ||||| ||||| ||    ||||||     ||  |||  | || | |||    | |||| ||     |||||||||||||||||||||| ||||||||| || ||||| ||||| || |||||||||||||||||  |||||||||| || ||||| ||||| || || |
gtaattataaggtgctgtttaattactctgatttctgatgatcactattaatatatttt-----tacaatttga-atcatttgtgcatattttaat-----tagGTTCTGGATGAAATTCACCTGCAATCTGTTGTTTTATCTTCCCGCCCATCTGTATCTTCTATTGGACCTGTTCCTGCACCTAATGATGTTGTCGATTCCT

upper sequence: Vv02s0087g00420.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G45290.2 (Arabidopsis thaliana), 3'ss of exon 3
gtgatgctaatatattattatattttgtgatggtcactttt--ccagtattttctttgtatcattcaatataagttgaatttttttttatac-ctatagGTTCTGGATGAAATTCACCAGCAATCTGTGGTCTTATCGTCCCGA---CCTTCTGTATCTTCTATTGGTTCTGTTCCTGCTCCAAATGAAGTTGTAGAATCTT
    |    | || || |     |   |  |     |||||  ||| ||| ||  || | ||||  |   ||||  ||  |    |  || |  | |||||||| ||||||||||| ||||||||||| |||||||| || | |   || || ||||| ||||| || ||||||||||| || || || ||||| || |   
---gtaaatacatgttttcggtctccctactaacagctttttgccactatctttctt-tctcatgtatgctaag--gatctacagtgcattcattttagGTTCTTGATGAAATTCATCAGCAATCTGTTGTCTTATCCTCTCAACAACCATCAGTATCATCTATAGGATCTGTTCCTGCACCTAACGACGTTGTGGATT---


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccagtattttctttgtatcattcaatataagttgaatttttttttatacctatagGTTCTGGATGAAATTCACCAGCAATCTGTGGTCTTATCGTCCCGACCTTCTGTATCTTCTATTGGTTCTGTTCCTGCTCCAAATGAAGTTGTAGAATCTT
                                    tttttttttatacct  CT-rich tract
           tttgtatcattcaata  TA-rich tract