Sequence
atgc intronic sequence ATGC exonic sequence...ttaattgagcattaaatctatgaatacacaattctttctaacttgatgtaggctacttctgaagtttctggcattctcttgagttaacttcaattttcagGTTATTGCAGTGGGTTATGCTATCATGACAACAAGATCCGTAGATCTGAACTGGAAGATGAGGGCTTTTCGTGTTCTGCCAATGTTTCTGTTGCCTGGTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0033g01150.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA17G29620.1 (Glycine max), 3'ss of exon 1
-ttaattgagcattaaatctatgaatacacaattctttctaacttgatgt--aggctacttctgaagtttctggcattctcttgagttaacttcaattttcagGTTATTGCAGTGGGTTATGCTATCATGACAACAAGATCCGTAGATCTGAACTGGAAGATGAGGGCTTTTCGTGTTCTGCCAATGTTTCTGTTGCCTGGTT
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ttgaattttaaatttcttctctgacaaattaatatattcttattgattattgagggtgtttttataaat---ggattttgcttaaaatggtttcaactttcagGTCATTGCTGTAGGTTATGCTATTATGACAACAAGATCAATGGATATGAATTGGAAAATGAGGGCAATCCGAGTTTTGCCAATGTTTCTTTTGCCTGCCT
upper sequence: Vv02s0033g01150.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA14G17080.1 (Glycine max), 3'ss of exon 1
ttaattgagcattaaatctatgaatacac-aattctttctaacttgatgt--aggctacttctgaagtttctggcattctcttgagttaacttcaattttcagGTTATTGCAGTGGGTTATGCTATCATGACAACAAGATCCGTAGATCTGAACTGGAAGATGAGGGCTTTTCGTGTTCTGCCAATGTTTCTGTTGCCTGGTT
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tgaattttaaatttctcctctagacaaattaatatattcctgctgactattgagggtggttttataaat---ggatttttcttaaaatggtttcaactttcagGTCATTGCTGTAGGATATGCTATTATGACAACAAGATCAATGGATATGAATTGGAAAATGAGGGCAATCCGAGTTTTGCCAATGTTTCTTTTGCCTGCCT
upper sequence: Vv02s0033g01150.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA04G07860.1 (Glycine max), 3'ss of exon 2
ttaattgagcattaaatctatga--atacacaattctttctaacttgatgtaggctacttctgaagtttctggcattctcttgagttaacttcaattttcagGTTATTGCAGTGGGTTATGCTATCATGACAACAAGATCCGTAGATCTGAACTGGAAGATGAGGGCTTTTCGTGTTCTGCCAATGTTTCTGTTGCCTGGTT
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ctaaataag--ttggtcttgtggtcctgctctgttatacccttttttttaatggaaattaaagagaaagaagtaatgtgcttaaaatagtttcaactttcagGTAGTTGCTATAGTTTATGCTATTATGACAACAAGATCAATCGATATGAATTGGAAAATGAGGGCAATCCGGGTTCTGCCAATGTTTCTTTTGCCCGCAC
upper sequence: Vv02s0033g01150.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA06G07930.1 (Glycine max), 3'ss of exon 2
--ttaattgagcattaaatctatgaatacacaattctttc--taacttgatgta-ggctacttctgaagtttctggcattctcttgagttaacttcaattttcagGTTATTGCAGTGGGTTATGCTATCATGACAACAAGATCCGTAGATCTGAACTGGAAGATGAGGGCTTTTCGTGTTCTGCCAATGTTTCTGTTGCCTGGTT
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aataagttggtcttgtggtcc-----tactctgttgttacagcaattttttaaatggtaattaaagagaaagaaggaatgtgcttaaaatagtttcaactttcagGTCGTTGCTGTAGTTTATGCTATTATGACAACTAGATCAATCGATCTGAATTGGAAAATGAGGGCAATCCGGGTTTCGCCAATGTTTCTTTTGCCTGCACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161714289|gb|FC064174.1|FC064174EST: GTTCGAGGACAATGACAAGGAATCTCATAGTACTGTCAGTGATTTTGGAG GTTATTGCAGTGGGTTATGCTATCATGACAACAAGATCCGTAGATCTGAAC
genomic: GTTCGAGGACAATGACAAGGAATCTCATAGTACTGTCAGTGATTTTGGAGgtaaatttgc ... caattttcagGTTATTGCAGTGGGTTATGCTATCATGACAACAAGATCCGTAGATCTGAAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgtaggctacttctgaagtttctggcattctcttgagttaacttcaattttcagGTTATTGCAGTGGGTTATGCTATCATGACAACAAGATCCGTAGATCTGAACTGGAAGATGAGGGCTTTTCGTGTTCTGCCAATGTTTCTGTTGCCTGGTT
agttaac putative branch site (score: 3)
ttttc putative PPT
ttaacttcaatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttaattgagcattaaatctatgaatacacaattctttctaacttgatgtaggctacttctgaagtttctggcattctcttgagttaacttcaattttcagGTTATTGCAGTGGGTTATGCTATCATGACAACAAGATCCGTAGATCTGAACTGGAAGATGAGGGCTTTTCGTGTTCTGCCAATGTTTCTGTTGCCTGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - aatacac
- - - - - - - - - - - - - - - - - - - - -cttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -cttctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttctgg