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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaacagtttatacttctgctcttattattgctattttatttctgtatatggttttaaattttttctttttgcagTCATTGAGAAAGATGAACCACCCAAACATTGTGAAGCTCAGGGAAGTCTTTAGGGAAAATGATATTTTGTACTTTGTGTTTGAATACATG

Basic information

species Vitis vinifera
transcript Vv02s0033g01110.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0033g01110.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os06g02555.1 (Oryza sativa), 3'ss of exon 3
-------gtaaaacagtttatacttctgctc--ttattattgctattttatttc-tgtatatggttttaaatttttt-ctttttgcagTCATTGAGAAAGATGAACCACCCAAACATTGTGAAGCTCAGGGAAGTCTTTAGGGAAAATGATATTTTGTACTTTGTGTTTGAATACATG
        | |  ||   | || |   | |   | || ||  ||||| || ||| |  ||||  ||||   || | | |   |  ||||| ||| ||| ||||||||| || ||||||||||| |||| ||||||| | ||||| |||||||| || | |||||| ||||||||||||
gtgctttattatgcaacatgtaatcaagtttgatcatgatatctattatacttcattaatatattttttttttgtgtgcgcatcccagTCTTTGCGAAGGATGAACCATCCGAACATTGTGAAACTCAAGGAAGTCATAAGGGAGAATGATATGTTATTCTTTGTTTTTGAATACATG

upper sequence: Vv02s0033g01110.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA01G35190.2 (Glycine max), 3'ss of exon 3
------------gtaaaacagtttatacttctgctcttattattgctattttatttctgtata--tggttttaaattttttctttttgcagTCATTGAGAAAGATGAACCACCCAAACATTGTGAAGCTCAGGGAAGTCTTTAGGGAAAATGATATTTTGTACTTTGTGTTTGAATACATG
            |   |||  | | ||    |  |  |  | |   | ||  || | | ||||  |  | |  ||||||   | ||  ||||||||  | || ||||| |||||||| ||||||||||| | ||||||  || | |||| |||||||||||||||||| ||||| ||||||
gttccacatcttgccgaactttctgtagccttatttgtcat-tcattgttggatatgtatataattattctctaattttccttgttgacagTCATTACGTAAAATGAATCACCCAAATATTGTGAAGCTGAAGGAAGTTATTCGAGAAAGTGATATTTTGTACTTTGTTTTTGAGTACATG

upper sequence: Vv02s0033g01110.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA09G34610.1 (Glycine max), 3'ss of exon 3
------------gtaaaacagtttatacttctgctc-ttat-tattgctattttatt-tctgtata--tggttttaaattttttctttttgcagTCATTGAGAAAGATGAACCACCCAAACATTGTGAAGCTCAGGGAAGTCTTTAGGGAAAATGATATTTTGTACTTTGTGTTTGAATACATG
            ||  | || | | ||    |  || | ||  |||| |   ||||| | | ||||  |  | |  ||||||   |||| |||||||||  |||| ||||| |||||||| ||||||||||| |  |||||  || | |||| |||||| ||||||||||| ||||| ||||||
gttccacatcttgtcgatcattctgtaaccttattcgtcatacattgtttgattattatgtatataattattctctaattttcctttttggcagTCATTACGAAAAATGAATCACCCAAATATTGTGAAGCTGAAAGAAGTTATTCGAGAAAGTGATATCTTGTACTTTGTTTTTGAGTACATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttattattgctattttatttctgtatatggttttaaattttttctttttgcagTCATTGAGAAAGATGAACCACCCAAACATTGTGAAGCTCAGGGAAGTCTTTAGGGAAAATGATATTTTGTACTTTGTGTTTGAATACATG
                                       ttttttctttttgc  CT-rich tract
            tattttatttctgtat  TA-rich tract