1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gctgacagatcaatgacttaatgtctttcttagtccaccttcaccaatacatactttccaatttgtttcctaacagaaaattgaacttttacgactgcagAGAGATTCATCTTACTCGAGGATGGGATCGGCAAGGGAAAGCCCTATGACTCCATCACTAAACAAGGAATGGATTCCGAGGAACTATTATAAACCATCTG
species | Vitis vinifera |
transcript | Vv02s0033g00590.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAGATTCAACCGCCAAGCTCTACACACTCCTCCTAGGTCTGAGGACGAG AGAGATTCATCTTACTCGAGGATGGGATCGGCAAGGGAAAGCCCTATGACT
genomic: AGAGATTCAACCGCCAAGCTCTACACACTCCTCCTAGGTCTGAGGACGAGgtaaacaggt ... acgactgcagAGAGATTCATCTTACTCGAGGATGGGATCGGCAAGGGAAAGCCCTATGACT
aatacatactttccaatttgtttcctaacagaaaattgaacttttacgactgcagAGAGATTCATCTTACTCGAGGATGGGATCGGCAAGGGAAAGCCCTATGACTCCATCACTAAACAAGGAATGGATTCCGAGGAACTATTATAAACCATCTG
tcctaac putative branch site (score: 1)
cttttac putative PPT
aaaattgaactttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctgacagatcaatgacttaatgtctttcttagtccaccttcaccaatacatactttccaatttgtttcctaacagaaaattgaacttttacgactgcagAGAGATTCATCTTACTCGAGGATGGGATCGGCAAGGGAAAGCCCTATGACTCCATCACTAAACAAGGAATGGATTCCGAGGAACTATTATAAACCATCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - ccacctt
- - - - - - - - - - - - - - - - - - - - -caccaat
- - - - - - - - - - - - - - - - - - - - - - - - - - -ctttcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaaat