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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caccaggattggtttgatgcagtttttctacgttttattattgttagatctctgttttttcatgcatttatatggctctttcctcatgtaaaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTATGGGGGAACTGCAGCTTTATTCAACTGTGTCAACTGGGTGGAGAGTAGTT

Basic information

species Vitis vinifera
transcript Vv02s0025g04580.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g04580.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA16G32480.1 (Glycine max), 3'ss of exon 3
caccaggattggtttgatgcagtttttctacgttttattattgttagatctctgttttttcatgcatt-tatatggctctttcctca---tgtaaaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTATGGGGGAACTGCAGCTTTATTCAACTGTGTCAACTGGGTGGAGAGTAGTT
     |  |     | |   ||   |   | |   ||   |      |||| | ||| | | |   |  | | ||  ||||   | |     |  || || |||| | |||| |||| ||||||||||||||||||||||| ||||||||||||||| ||||| || ||||| ||||||||||| || |||||||||||||| |
---atgagtcaaaattagaaaggaataaaaggaaataa-gtaaaggaatctgtatttgtgcttatgtgatgtctgcatcttatattaactcatccaacaatcagGCAAGTGGTAATACTGACATTGAAGGTGTTGATTCAACTAATGCATGCTATGGAGGAACGGCTGCTTTGTTCAACTGTGTGAATTGGGTGGAGAGTAGCT

upper sequence: Vv02s0025g04580.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA09G27380.1 (Glycine max), 3'ss of exon 3
caccaggattggtttgatgcagtttttc-tacgttttattattgttagatctctgttttttcatgcatttatatggctctttcctcatgtaaaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTATGGGGGAACTGCAGCTTTATTCAACTGTGTCAACTGGGTGGAGAGTAGTT
    | |||  ||   |   ||       ||      |  |    |  ||   ||||| |      || |  ||   | | |   |   |  || || |||| | |||| |||| ||||||||||||||||||||||| ||||||||||||||| ||||| || ||||| ||||| ||||| || |||||||||||||| |
tttgaagatgagtcaaaattagaaaggaataaaaggaaagaaatctgcattcgtgtttatgtg-atatctgcatctttatattaactcatgcaacaatcagGCAAGTGGTAATATTGACATTGAAGGTGTTGATTCAACTAATGCATGCTATGGAGGAACAGCTGCTTTGTTCAATTGTGTGAATTGGGTGGAGAGTAGCT

upper sequence: Vv02s0025g04580.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: EFJ12678 (Selaginella moellendorffii), 3'ss of exon 3
caccaggattggtttgatgcagtttttctacgttttattattgttagatctctgttttttcatgcatttatatggctctttcctcatgtaaaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTATGGGGGAACTGCAGCTTTATTCAACTGTGTCAACTGGGTGGAGAGTAGTT------
                               ||   || |   | |||||    ||  |   ||  | ||| |  |  |        || |||  | |  | |   |  || | || ||||||||| ||||| || |  ||||| |||||||| ||||| |||||  | |||||||||||||||||| | || ||| | |      
-------------------------------gtgagatgagactgagatcgtcattcgtctttg-gtctatgtaacgttg-------gttaaa--aacctggacagGAGAACAGTGGCATTGAAGGCGTTGACTCCACCAATGCTTGCTATGGAGGAACCGCAGCGCTCTTCAACTGTGTCAACTGGATCGAAAGTCGCTCATGGG

upper sequence: Vv02s0025g04580.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: EFJ13836 (Selaginella moellendorffii), 3'ss of exon 3
caccaggattggtttgatgcagtttttctacgttttattattgttagatctctgttttttcatgcatttatatggctctttcctcatgtaaaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTATGGGGGAACTGCAGCTTTATTCAACTGTGTCAACTGGGTGGAGAGTAGTT------
                               ||   || |   | |||||    ||  |   ||  | ||| |  |  |        || |||  | |  | |   |  || | || ||||||||| ||||| || |  ||||| |||||||| ||||| |||||  | |||||||||||||||||| | || ||| | |      
-------------------------------gtgagatgagactgagatcgtcattcatctttg-gtctatgtaacgttg-------gttaaa--aacctggacagGAGAACAGTGGCATTGAAGGCGTTGACTCCACCAATGCTTGCTATGGAGGAACCGCAGCGCTCTTCAACTGTGTCAACTGGATCGAAAGTCGCTCATGGG

upper sequence: Vv02s0025g04580.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: EFJ16163 (Selaginella moellendorffii), 3'ss of exon 3
caccaggattggtttgatgcagtttttctacgttttattattgttagatctctgttttttcatgcatttatatggctctttcctcatgtaaaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTATGGGGGAACTGCAGCTTTATTCAACTGTGTCAACTGGGTGGAGAGTAGTT
           ||  || |   |   ||   | |  |     |  ||| | |     |  | |    || |   | |  ||  || | | |      ||||| | ||||||   ||||||| |||| || ||||| || ||||| |||||||| || ||||| ||| || |||| ||| |||||||||||||||| ||| 
-----------gtacgacgagctcgatcgttgctcgagcga-gaaagaacacaaggctaacttttccttgtcatgtttctttttcttatta------cagGAGTCTGGAAACTCTGACATTCAAGGCGTGGATTCCAGCAATGCGTGCTATGGAGGCACTGCCGCTCTAATCAATTGTCTCAACTGGGTGGAGAGCAGTG

upper sequence: Vv02s0025g04580.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: EFJ17031 (Selaginella moellendorffii), 3'ss of exon 3
caccaggattggtttgatgcagtttttctacgttttattattgttagatctctgttttttcatgcatttatatggctctttcctcatgtaaaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTATGGGGGAACTGCAGCTTTATTCAACTGTGTCAACTGGGTGGAGAGTAGTT
           ||  || |   |   ||   | |  |          |     |  | |   | | |||  |||    ||| || ||          ||||| | ||||||   ||||||| |||| || ||||| || ||||| |||||||| || ||||| ||| || |||| ||| |||||||||||||||| ||| 
-----------gtacgacgagctcgatcgttgctcgagcgagaaagaacacaagactatcttttccttttcatgttctttttcttatt--------acagGAGTCTGGAAACTCTGACATTCAAGGCGTGGATTCCAGCAATGCGTGCTATGGAGGCACTGCCGCTCTAATCAATTGTCTCAACTGGGTGGAGAGCAGTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110387333|gb|EC951991.1|EC951991
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|110698402|gb|EE075860.1|EE075860
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|110709565|gb|EE085137.1|EE085137
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|71860473|gb|DT009528.1|DT009528
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGCGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|351015524|gb|FQ447353.1|FQ447353
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|110390437|gb|EC955346.1|EC955346
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|110729426|gb|EE105370.1|EE105370
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|110699371|gb|EE076321.1|EE076321
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|110691612|gb|EE069914.1|EE069914
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|294966823|gb|GW837842.1|GW837842
EST:     TGATAGGCAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|110374042|gb|EC938533.1|EC938533
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|71860824|gb|DT009879.1|DT009879
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|71861327|gb|DT010382.1|DT010382
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|71860522|gb|DT009577.1|DT009577
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|352778070|gb|FQ467123.1|FQ467123
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|33401501|gb|CF207128.1|CF207128
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|34545276|gb|CF513508.1|CF513508
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|352777936|gb|FQ466989.1|FQ466989
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|110699704|gb|EE076934.1|EE076934
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|30297572|gb|CB974366.1|CB974366
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|110383242|gb|EC947601.1|EC947601
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|71862441|gb|DT011496.1|DT011496
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGCGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|71859989|gb|DT009044.1|DT009044
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|352785913|gb|FQ475916.1|FQ475916
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|352794809|gb|FQ475304.1|FQ475304
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|110698626|gb|EE076340.1|EE076340
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|30255111|gb|CB971558.1|CB971558
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|71864278|gb|DT013333.1|DT013333
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|71862577|gb|DT011632.1|DT011632
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|110379517|gb|EC944717.1|EC944717
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|71860705|gb|DT009760.1|DT009760
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|110698484|gb|EE076038.1|EE076038
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|110385868|gb|EC950425.1|EC950425
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|161719369|gb|FC064848.1|FC064848
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|71861812|gb|DT010867.1|DT010867
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|27580267|gb|CB002962.1|CB002962
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|110727089|gb|EE103473.1|EE103473
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|71864766|gb|DT013821.1|DT013821
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|71862941|gb|DT011996.1|DT011996
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|349823636|gb|FQ415046.1|FQ415046
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|71864669|gb|DT013724.1|DT013724
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|71864506|gb|DT013561.1|DT013561
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|71863130|gb|DT012185.1|DT012185
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|71861453|gb|DT010508.1|DT010508
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|71860640|gb|DT009695.1|DT009695
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|71864508|gb|DT013563.1|DT013563
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|71857514|gb|DT006569.1|DT006569
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|30255107|gb|CB971554.1|CB971554
EST:     TGATANA-AAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|71864646|gb|DT013701.1|DT013701
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCCTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATCGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
EST: gi|351020029|gb|FQ439846.1|FQ439846
EST:     TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAG                         GAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT
genomic: TGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGgtatttttcc ... aaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatctctgttttttcatgcatttatatggctctttcctcatgtaaaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTATGGGGGAACTGCAGCTTTATTCAACTGTGTCAACTGGGTGGAGAGTAGTT
                                        atgtaaaataa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
caccaggattggtttgatgcagtttttctacgttttattattgttagatctctgttttttcatgcatttatatggctctttcctcatgtaaaataagcagGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTATGGGGGAACTGCAGCTTTATTCAACTGTGTCAACTGGGTGGAGAGTAGTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - -ggattgg
- - - - - - - -gatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcatg