1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacggaacccactctattgattatcaattttatcattacctaaaaacagggatgaaagaaaaggcttgtgtgtttgaaatgttacagtgtgctaatcttggttcgtttattcatattcagATAAATTGCGCCATAATTCCTAGAGAAGGGTCTGACTTGGACGAATCAGAGGTGCTGCGGTTTTGCAAGAAGAATTTGGCAACTTTCAAGGTTCCAAAGA
species | Vitis vinifera |
transcript | Vv02s0025g03660.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGCCCAAGGTGTTGCATTTGGAGTCCCTGATGACAAGTATGGGGAAGAG ATAAATTGCGCCATAATTCCTAGAGAAGGGTCTGACTTGGACGAATCAGAGEST: gi|30321184|gb|CD004446.1|CD004446
genomic: TTGCCCAAGGTGTTGCATTTGGAGTCCCTGATGACAAGTATGGGGAAGAGgtacggaacc ... tcatattcagATAAATTGCGCCATAATTCCTAGAGAAGGGTCTGACTTGGACGAATCAGAG
EST: TTGCCCAAGGTGTTGCATTTGGAGTCCCTGATGACAAGTATGGGGAAGAG ATAAATTGCGCCATAATTCCTAGAGAAGGGTCTGACTTGGACGAATCAGAGEST: gi|27580993|gb|CB003688.1|CB003688
genomic: TTGCCCAAGGTGTTGCATTTGGAGTCCCTGATGACAAGTATGGGGAAGAGgtacggaacc ... tcatattcagATAAATTGCGCCATAATTCCTAGAGAAGGGTCTGACTTGGACGAATCAGAG
EST: TTGCCCAAGGTGTTGCATTTGGAGTCCCTGATGACAAGTATGGGGAAGAG ATAAATTGCGCCATAATTCCTAGAGAAGGGTCTGACTTGGACGAATCAGAGEST: gi|32458226|gb|CD799400.1|CD799400
genomic: TTGCCCAAGGTGTTGCATTTGGAGTCCCTGATGACAAGTATGGGGAAGAGgtacggaacc ... tcatattcagATAAATTGCGCCATAATTCCTAGAGAAGGGTCTGACTTGGACGAATCAGAG
EST: TTGCCCAAGGTGTTGCATTTGGAGTCCCTGATGACAAGTATGGGGAAGAG ATAAATTGCGCCATAATTCCTAGAGAAGGGTCTGACTTGGACGAATCAGAGEST: gi|32458106|gb|CD799280.1|CD799280
genomic: TTGCCCAAGGTGTTGCATTTGGAGTCCCTGATGACAAGTATGGGGAAGAGgtacggaacc ... tcatattcagATAAATTGCGCCATAATTCCTAGAGAAGGGTCTGACTTGGACGAATCAGAG
EST: TTGCCCAAGGTGTTGCATTTGGAGTCCCTAATGACAAGTATGGGGAAGAG ATAAATTGCGCCATAATTCCTAGAGAAGGGTCTGACTTGGACGAATCAGAGEST: gi|110382454|gb|EC946745.1|EC946745
genomic: TTGCCCAAGGTGTTGCATTTGGAGTCCCTGATGACAAGTATGGGGAAGAGgtacggaacc ... tcatattcagATAAATTGCGCCATAATTCCTAGAGAAGGGTCTGACTTGGACGAATCAGAG
EST: TTGCCCAAGGTGTTGCATTTGGAGTCCCTGATGACAAGTATGGGGAAGAG ATAAATTGCGCCATAATTCCTAGAGAAGGGTCTGACTTGGACGAATCAGAGEST: gi|110366809|gb|EC930727.1|EC930727
genomic: TTGCCCAAGGTGTTGCATTTGGAGTCCCTGATGACAAGTATGGGGAAGAGgtacggaacc ... tcatattcagATAAATTGCGCCATAATTCCTAGAGAAGGGTCTGACTTGGACGAATCAGAG
EST: TTGCCCAAGGTGTTGCATTTGGAGTCCCTGATGACAAGTATGGGGAAGAG ATAAATTGCGCCATAATTCCTAGAGAAGGGTCTGACTTGGACGAATCAGAGEST: gi|83275371|gb|DV939379.1|DV939379
genomic: TTGCCCAAGGTGTTGCATTTGGAGTCCCTGATGACAAGTATGGGGAAGAGgtacggaacc ... tcatattcagATAAATTGCGCCATAATTCCTAGAGAAGGGTCTGACTTGGACGAATCAGAG
EST: TTGCCCAAGGTGTTGCATTTGGAGTCCCTGATGACAAGTATGGGGAAGAG ATAAATTGCGCCATAATTCCTAGAGAAGGGTCTGACTTGGACGAATCAGAGEST: gi|110363490|gb|EC927083.1|EC927083
genomic: TTGCCCAAGGTGTTGCATTTGGAGTCCCTGATGACAAGTATGGGGAAGAGgtacggaacc ... tcatattcagATAAATTGCGCCATAATTCCTAGAGAAGGGTCTGACTTGGACGAATCAGAG
EST: TTGCCCAAGGTGTTGCATTTGGAGTCCCTGATGACAAGTATGGGGAAGAG ATAAATTGCGCCATAATTCCTAGAGAAGGGTCTGACTTGGACGAATCAGAG
genomic: TTGCCCAAGGTGTTGCATTTGGAGTCCCTGATGACAAGTATGGGGAAGAGgtacggaacc ... tcatattcagATAAATTGCGCCATAATTCCTAGAGAAGGGTCTGACTTGGACGAATCAGAG
ttgtgtgtttgaaatgttacagtgtgctaatcttggttcgtttattcatattcagATAAATTGCGCCATAATTCCTAGAGAAGGGTCTGACTTGGACGAATCAGAGGTGCTGCGGTTTTGCAAGAAGAATTTGGCAACTTTCAAGGTTCCAAAGA
tgctaat putative branch site (score: 2)
tttattc putative PPT
tttattcatattca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacggaacccactctattgattatcaattttatcattacctaaaaacagggatgaaagaaaaggcttgtgtgtttgaaatgttacagtgtgctaatcttggttcgtttattcatattcagATAAATTGCGCCATAATTCCTAGAGAAGGGTCTGACTTGGACGAATCAGAGGTGCTGCGGTTTTGCAAGAAGAATTTGGCAACTTTCAAGGTTCCAAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG