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...atcagttcaaaatttacgtagtgtttcaaatagtggactttgaaacaaaaggaagaaaatgaaaggaaaaattcactacttgtccttttcccccctgcagAACTTTACAAGATGGTTTGTGAGCCTGATGAAACTGATCTTGATATAAAAATACCTGCTGTCATGCTTCCACAAGAAGCTGGTGCAAGCTTGGAAAAAAT
species | Vitis vinifera |
transcript | Vv02s0025g03400.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCAGAAGCTGCTGGTGCTTCAGCTGTTCTCATTATAAACAACCAGAAAG AACTTTACAAGATGGTTTGTGAGCCTGATGAAACTGATCTTGATATAAAAAEST: gi|110730963|gb|EE108639.1|EE108639
genomic: TGCAGAAGCTGCTGGTGCTTCAGCTGTTCTCATTATAAACAACCAGAAAGgtaattacat ... ccccctgcagAACTTTACAAGATGGTTTGTGAGCCTGATGAAACTGATCTTGATATAAAAA
EST: TGCAGAAGCTGCTGGTGCTTCAGCTGTCCTCATTATAAACAACCAGAAAG AACTTTACAAGATGGTTTGTGAGCCTGATGAAACTGATCTTGATATAAAAAEST: gi|110719096|gb|EE096681.1|EE096681
genomic: TGCAGAAGCTGCTGGTGCTTCAGCTGTTCTCATTATAAACAACCAGAAAGgtaattacat ... ccccctgcagAACTTTACAAGATGGTTTGTGAGCCTGATGAAACTGATCTTGATATAAAAA
EST: TGCAGAAGCTGCTGGTGCTTCAGCTGTCCTCATTATAAACAACCAGAAAG AACTTTACAAGATGGTTTGTGAGCCTGATGAAACTGATCTTGATATAAAAAEST: gi|110686052|gb|EE063308.1|EE063308
genomic: TGCAGAAGCTGCTGGTGCTTCAGCTGTTCTCATTATAAACAACCAGAAAGgtaattacat ... ccccctgcagAACTTTACAAGATGGTTTGTGAGCCTGATGAAACTGATCTTGATATAAAAA
EST: TGCAGAAGCTGCTGGTGCTTCAGCTGTTCTCATTATAAACAACCAGAAAG AACTTTACAAGATGGTTTGTGAGCCTGATGAAACTGATCTTGATATAAAAAEST: gi|110689976|gb|EE066669.1|EE066669
genomic: TGCAGAAGCTGCTGGTGCTTCAGCTGTTCTCATTATAAACAACCAGAAAGgtaattacat ... ccccctgcagAACTTTACAAGATGGTTTGTGAGCCTGATGAAACTGATCTTGATATAAAAA
EST: TGCAGAAGCTGCTGGTGCTTCAGCTGTTCTCATTATAAACAACCAGAAAG AACTTTACAAGATGGTTTGTGAGCCTGATGAAACTGATCTTGATATAAAAAEST: gi|110685071|gb|EE063074.1|EE063074
genomic: TGCAGAAGCTGCTGGTGCTTCAGCTGTTCTCATTATAAACAACCAGAAAGgtaattacat ... ccccctgcagAACTTTACAAGATGGTTTGTGAGCCTGATGAAACTGATCTTGATATAAAAA
EST: TGCAGAAGCTGCTGGTGCTTCAGCTGTCCTCATTATAAACAACCAGAAAG AACTTTACAAGATGGTTTGTGAGCCTGATGAAACTGATCTTGATATAAAAA
genomic: TGCAGAAGCTGCTGGTGCTTCAGCTGTTCTCATTATAAACAACCAGAAAGgtaattacat ... ccccctgcagAACTTTACAAGATGGTTTGTGAGCCTGATGAAACTGATCTTGATATAAAAA
caaaaggaagaaaatgaaaggaaaaattcactacttgtccttttcccccctgcagAACTTTACAAGATGGTTTGTGAGCCTGATGAAACTGATCTTGATATAAAAATACCTGCTGTCATGCTTCCACAAGAAGCTGGTGCAAGCTTGGAAAAAAT
ttcactacttgtcctt CT-rich tract
aaaatgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcagttcaaaatttacgtagtgtttcaaatagtggactttgaaacaaaaggaagaaaatgaaaggaaaaattcactacttgtccttttcccccctgcagAACTTTACAAGATGGTTTGTGAGCCTGATGAAACTGATCTTGATATAAAAATACCTGCTGTCATGCTTCCACAAGAAGCTGGTGCAAGCTTGGAAAAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - tcaaaat
- - - - - - - - - - - - - caaatag
- - - - - - - - - - - - - - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaaa