Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgaaaatatttataactttgacattgaatgagacactcctcttcaaatccttaaatggctacaacctaacatgtaatgcaataattttattttttgcagGTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCACGTGAAAGTGGCAGAGAAGGAAGGATTGTAAATGTTTCATCAGAAGGTCA

Basic information

species Vitis vinifera
transcript Vv02s0025g03380.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110362262|gb|EC925782.1|EC925782
EST:     ATGACAACATAGAGGTGCAGTTTGCAACCAACCATTTAG                         GTCATTTTCTTTTGACCAACCTTGTGCTGGAAACCATGAAAAATACAGCAC
genomic: ATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAGgtatgtttca ... ttttttgcagGTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCAC
EST: gi|110369965|gb|EC934139.1|EC934139
EST:     CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAG                         GTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCAC
genomic: CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAGgtatgtttca ... ttttttgcagGTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCAC
EST: gi|161715967|gb|FC068756.1|FC068756
EST:     CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAG                         GTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCAC
genomic: CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAGgtatgtttca ... ttttttgcagGTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCAC
EST: gi|110373040|gb|EC937247.1|EC937247
EST:     CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAG                         GTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCAC
genomic: CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAGgtatgtttca ... ttttttgcagGTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCAC
EST: gi|71857391|gb|DT006446.1|DT006446
EST:     CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAG                         GTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCAC
genomic: CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAGgtatgtttca ... ttttttgcagGTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCAC
EST: gi|110395392|gb|EC961055.1|EC961055
EST:     CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAG                         GTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCAC
genomic: CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAGgtatgtttca ... ttttttgcagGTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCAC
EST: gi|110394584|gb|EC959749.1|EC959749
EST:     CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAG                         GTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCAC
genomic: CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAGgtatgtttca ... ttttttgcagGTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCAC
EST: gi|71868300|gb|DT017355.1|DT017355
EST:     CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAG                         GTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCAC
genomic: CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAGgtatgtttca ... ttttttgcagGTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCAC
EST: gi|110361021|gb|EC924471.1|EC924471
EST:     CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAG                         GTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCAC
genomic: CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAGgtatgtttca ... ttttttgcagGTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCAC
EST: gi|110417605|gb|EC983675.1|EC983675
EST:     CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAG                         GTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCAC
genomic: CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAGgtatgtttca ... ttttttgcagGTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCAC
EST: gi|110712661|gb|EE087900.1|EE087900
EST:     CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAG                         GTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCAC
genomic: CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAGgtatgtttca ... ttttttgcagGTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCAC
EST: gi|161706209|gb|FC055419.1|FC055419
EST:     CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAG                         GTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCAC
genomic: CCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAGgtatgtttca ... ttttttgcagGTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatccttaaatggctacaacctaacatgtaatgcaataattttattttttgcagGTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCACGTGAAAGTGGCAGAGAAGGAAGGATTGTAAATGTTTCATCAGAAGGTCA
                   acctaac  putative branch site (score: 2)
                                        ttttatttttt  putative PPT
                      taacatgtaatgcaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctgaaaatatttataactttgacattgaatgagacactcctcttcaaatccttaaatggctacaacctaacatgtaatgcaataattttattttttgcagGTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCACGTGAAAGTGGCAGAGAAGGAAGGATTGTAAATGTTTCATCAGAAGGTCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- gaaaata
- - - - - - - - - - - - - - - - -acactcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - aatggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacctaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaataa