1 5' 3' | 2 5' 3' | 3 5' 3' |
...atgaaacttctgaccaaaaaaccaatgtagtgtattagtcctagcatgagtttgtgtgacattaatggttacataacttgaagatatctgttttttgtagTTCTTTTGCTTGGAGCAAGAGTGGCAGCATCAGCAACAATGACATCTCAGGGCCAAGAGAAAAGGGCATGGTTGATCTTAGCATGGGTGAGCACGGTTGC
species | Vitis vinifera |
transcript | Vv02s0025g03310.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TACCCTAGTCATTCTTGTCCTCTCAAATGTTGCTTCAAATGTGCCTACTG TTCTTTTGCTTGGAGCAAGAGTGGCAGCATCAGCAGCAATGACATCTCAGGEST: gi|110421288|gb|EC987584.1|EC987584
genomic: TACCCTAGTCATTCTTGTCCTCTCAAATGTTGCTTCAAATGTGCCTACTGgtaacttcat ... ttttttgtagTTCTTTTGCTTGGAGCAAGAGTGGCAGCATCAGCAACAATGACATCTCAGG
EST: TACCCTAGTCATTCTTGTCCTCTCAAATGTTGCTTCAAATGTGCCTACTG TTCTTTTGCTTGGAGCAAGAGTGGCAGCATCAGCAACAATGACATCTCAGG
genomic: TACCCTAGTCATTCTTGTCCTCTCAAATGTTGCTTCAAATGTGCCTACTGgtaacttcat ... ttttttgtagTTCTTTTGCTTGGAGCAAGAGTGGCAGCATCAGCAACAATGACATCTCAGG
atgagtttgtgtgacattaatggttacataacttgaagatatctgttttttgtagTTCTTTTGCTTGGAGCAAGAGTGGCAGCATCAGCAACAATGACATCTCAGGGCCAAGAGAAAAGGGCATGGTTGATCTTAGCATGGGTGAGCACGGTTGC
acataac putative branch site (score: 3)
tctgtttttt putative PPT
ttttttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgaaacttctgaccaaaaaaccaatgtagtgtattagtcctagcatgagtttgtgtgacattaatggttacataacttgaagatatctgttttttgtagTTCTTTTGCTTGGAGCAAGAGTGGCAGCATCAGCAACAATGACATCTCAGGGCCAAGAGAAAAGGGCATGGTTGATCTTAGCATGGGTGAGCACGGTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - -ttctgac
- - - - - - - caaaaaa
- - - - - - - - - - -ccaatgt
- - - - - - - - - - - - - - - - - - - -cctagca
- - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acataac