1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gcaatgggtaccaagccatgttgttcagtgactccctttaaattagaaccatcggaaaagtgttctaaccatggagccagtggctattcttgttctacagAGTTTGCCAGCAGGAGAAGGAAGAAGATTTGATAGATCTTGGATGCCAATGTAGAGGTGGGCTTGCAAAATCTCACCGAACATGTATAGACACTTGGTTT
species | Vitis vinifera |
transcript | Vv02s0025g03030.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCCAAGAAGCCTCACCTTTCTAGGACTCCCAGTTCTCACGACCAATGCAG AGTTTGCCAGCAGGAGAAGGAAGAAGATTTGATAGATCTTGGATGCCAATGEST: gi|110362211|gb|EC925728.1|EC925728
genomic: CCCAAGAAGCCTCACCTTTCTAGGACTCCCAGTTCTCACGACCAATGCAGgttctgtcaa ... tgttctacagAGTTTGCCAGCAGGAGAAGGAAGAAGATTTGATAGATCTTGGATGCCAATG
EST: CCCAAGAAGCCTCACCTTTCTAGGACTCCCAGTTCTCACGACCAATGCAG AGTTTGCCAGCAGGAGAAGGAAGAAGATTTGATAGATCTTGGATGCCAATGEST: gi|71857563|gb|DT006618.1|DT006618
genomic: CCCAAGAAGCCTCACCTTTCTAGGACTCCCAGTTCTCACGACCAATGCAGgttctgtcaa ... tgttctacagAGTTTGCCAGCAGGAGAAGGAAGAAGATTTGATAGATCTTGGATGCCAATG
EST: CCCAAGAAGCCTCACCTTTCTAGGACTCCCAGTTCTCACGACCAATGCAG AGTTTGCCAGCAGGAGAAGGAAGAAGATTTGATAGATCTTGGATGCCAATGEST: gi|34548802|gb|CF517034.1|CF517034
genomic: CCCAAGAAGCCTCACCTTTCTAGGACTCCCAGTTCTCACGACCAATGCAGgttctgtcaa ... tgttctacagAGTTTGCCAGCAGGAGAAGGAAGAAGATTTGATAGATCTTGGATGCCAATG
EST: CCCAAGAAGCCTCACCTTTCTAGGACTCCCAGTACTCACGACCAATGCAG AGTTTGCCAGCAGGAGAAGGAAGAAGATTTGATAGATCTTGGATGCCAATGEST: gi|110718208|gb|EE094777.1|EE094777
genomic: CCCAAGAAGCCTCACCTTTCTAGGACTCCCAGTTCTCACGACCAATGCAGgttctgtcaa ... tgttctacagAGTTTGCCAGCAGGAGAAGGAAGAAGATTTGATAGATCTTGGATGCCAATG
EST: CCCAAGAAGCCTCACCTTTCTAGGACTCCCAGTTCTCACGACCAATGCAG AGTTTGCCAGCAGGAGAAGGAAGAAGATTTGATAGATCTTGGATGCCGATG
genomic: CCCAAGAAGCCTCACCTTTCTAGGACTCCCAGTTCTCACGACCAATGCAGgttctgtcaa ... tgttctacagAGTTTGCCAGCAGGAGAAGGAAGAAGATTTGATAGATCTTGGATGCCAATG
gaaccatcggaaaagtgttctaaccatggagccagtggctattcttgttctacagAGTTTGCCAGCAGGAGAAGGAAGAAGATTTGATAGATCTTGGATGCCAATGTAGAGGTGGGCTTGCAAAATCTCACCGAACATGTATAGACACTTGGTTT
ttctaac putative branch site (score: 1)
ttcttgttct putative PPT
tattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaatgggtaccaagccatgttgttcagtgactccctttaaattagaaccatcggaaaagtgttctaaccatggagccagtggctattcttgttctacagAGTTTGCCAGCAGGAGAAGGAAGAAGATTTGATAGATCTTGGATGCCAATGTAGAGGTGGGCTTGCAAAATCTCACCGAACATGTATAGACACTTGGTTT
-caatggg
- - - - - ccaagcc
- - - - - - - - - - - - - - - -ctccctt
- - - - - - - - - - - - - - - - - - - - - - agaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatgga