Sequence
atgc intronic sequence ATGC exonic sequencegtaaacactcccacattaatctcctttcaatttcttcctatgtctgtaaattttgattgaaaactgagttgattgtaatgatgcagGTGTTTGATTTCGCAGATAGCTACAGAGGGTCTTACAGCGACTCTCTCAGCTCGGTGGTCTGCCCATTCTACTGCTCCTACTCTGGATATCAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g02650.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os02g03120.1 (Oryza sativa), 3'ss of exon 1
--gtaaacactccc---acattaatctcctttcaatttcttcctatgtctg---taaattttg-attgaaaactgagttgattgtaatga------tgcagGTGTTTGATTTCGCAGATAGCTACAGAGGGTCTTACAGCGACTCTCTCAGCTCGGTGGTCTGCCCATTCTACTGCTCCTACTCTGGATATCAT
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tattaagtactttcttaatatttatgtcttttta-tttgattttaaatttgatttgattcttgtgttgtgcattggcgcgcatgcattgatgcatatgcagGTGTTTGATTTCGCGGACAAATACAGGGGATCATACAGCGACTCGCTGAGCTCAGTGGTGTGTCCGTTCTACTGCTCCCACTCCTACCAT---
upper sequence: Vv02s0025g02650.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G141911_T01 (Zea mays), 3'ss of exon 1
----------------------------------------------------------gtaaacactcccacattaatctcctttcaatttct-tcctatgtctgtaaattttgattg--aaaactgagttgattgtaatgatgcagGTGTTTGATTTCGCAGATAGCTACAGAGGGTCTTACAGCGACTCTCTCAGCTCGGTGGTCTGCCCATTCTACTGCTCCTACTCTGGATATCAT
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gtacgcgtgcagtcacatctcacatgacatgcctctgccttgctcttgggcggcgtgcgtgcgtgcccgcccgtgagccgtgacgcgacgtgtgccctgatcctctgatccgtcgtcgtcgtgtcgcgctcgcgcgtgcgcttgcagGTGTTTGACTTCGCGGACCGGTACAGGGGCTCGTACAGCGACTCGCTCAGCTCCGTGGCCTGCCCGTTCTACTGCTCCTACTCTGGCTACCAG
upper sequence: Vv02s0025g02650.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G03470.1 (Glycine max), 3'ss of exon 3
-------------------gtaaac-actcccacattaatctcctttcaatttcttcctatgtctgtaaattttgattgaaaactgagttgattgtaatgatgcagGTGTTTGATTTCGCAGATAGCTACAGAGGGTCTTACAGCGACTCTCTCAGCTCGGTGGTCTGCCCATTCTACTGCTCCTACTCTGGATATCAT
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gtaatacatatataaataaataaactgttcccccattttcatttcttgcattgctaagtgt-tgtgtactcttcattttctaatcatat-gaatgttactttgcagGTATTCAATTTTGCAGACCGTTACAGGGGTTCTTATAGTGATTCTCTTAATTCGGTTGTCTGTCCATTCTACTGCTCTTACTCTGGATACCATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161720276|gb|FC070537.1|FC070537EST: AGGACTCTGACCCTTCTTACTCCACAAAGCTGCTGCAAACCGCCATGAAA GTGTTTGATTTCGCAGATAGCTACAGAGGGTCTTACAGCGACTCTCTCAGC
genomic: AGGACTCTGACCCTTCTTACTCCACAAAGCTGCTGCAAACCGCCATGAAAgtaaacactc ... aatgatgcagGTGTTTGATTTCGCAGATAGCTACAGAGGGTCTTACAGCGACTCTCTCAGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcttcctatgtctgtaaattttgattgaaaactgagttgattgtaatgatgcagGTGTTTGATTTCGCAGATAGCTACAGAGGGTCTTACAGCGACTCTCTCAGCTCGGTGGTCTGCCCATTCTACTGCTCCTACTCTGGATATCAT
taaattttgattgaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaacactcccacattaatctcctttcaatttcttcctatgtctgtaaattttgattgaaaactgagttgattgtaatgatgcagGTGTTTGATTTCGCAGATAGCTACAGAGGGTCTTACAGCGACTCTCTCAGCTCGGTGGTCTGCCCATTCTACTGCTCCTACTCTGGATATCAT
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