1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagtatcactcttctagatataacgtgtgaggttttgaactgcccgcttacactcttcttgaaatgtgaattagcattttgttcattaggatgttttactcatattagctttccatgcaacccgcagCTTACTTCAATGATGCCCAGAGGCAGGCTACAAAGGATGCTGGCGTTATTGCTGGCCTGAATGTTGCACGAATTATTAATGAGCCAACTGCTGCAGCTAT
species | Vitis vinifera |
transcript | Vv02s0025g02140.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGAAGCATTCCTTGGGAAGAAGATCAAGGATGCTGTCGTTACTGTGCCTG CTTACTTCAATGATGCCCAGAGGCAGGCTACAAAGGATGCTGGCGTTATTGEST: gi|110725909|gb|EE102862.1|EE102862
genomic: TGAAGCATTCCTTGGGAAGAAGATCAAGGATGCTGTCGTTACTGTGCCCGgtgagtatca ... caacccgcagCTTACTTCAATGATGCCCAGAGGCAGGCTACAAAGGATGCTGGCGTTATTG
EST: TGAAGCATTCCTTGGGAAGAA-ATCAAGGATGCTGTCGTTACTGTGCCCG CTTACTTCAATGATGCCCAGAGGCAGGCTACAAAAGATGCTGGCGTTATTGEST: gi|30296634|gb|CB973428.1|CB973428
genomic: TGAAGCATTCCTTGGGAAGAAGATCAAGGATGCTGTCGTTACTGTGCCCGgtgagtatca ... caacccgcagCTTACTTCAATGATGCCCAGAGGCAGGCTACAAAGGATGCTGGCGTTATTG
EST: TGAAGCATTCCTTGGGAAGAAGATCAAGGATGCTGTCGTTACTGTGCCTG CTTACTTCAATGATGCCCAGAGGCAGGCTACAAAGGATGCTGGCGTTATTGEST: gi|352777237|gb|FQ473870.1|FQ473870
genomic: TGAAGCATTCCTTGGGAAGAAGATCAAGGATGCTGTCGTTACTGTGCCCGgtgagtatca ... caacccgcagCTTACTTCAATGATGCCCAGAGGCAGGCTACAAAGGATGCTGGCGTTATTG
EST: TGAAGCATTCCTTGGGAAGAAGATTAAGGATGCTGTCGTTACTGTGCCCG CTTACTTCAATGATGCCCAGAGGCAGGCTACAAAGGATGCTGGCGTTATTGEST: gi|110685799|gb|EE062845.1|EE062845
genomic: TGAAGCATTCCTTGGGAAGAAGATCAAGGATGCTGTCGTTACTGTGCCCGgtgagtatca ... caacccgcagCTTACTTCAATGATGCCCAGAGGCAGGCTACAAAGGATGCTGGCGTTATTG
EST: TGAAGCATTCCTTGGGAAGAAGATCAAGGATGCTGTCGTTACTGTGCCCG CTTACTTCAATGATGCCCAGAGGCAGGCTACAAAGGATGCTGGCGTTATTGEST: gi|110709376|gb|EE084780.1|EE084780
genomic: TGAAGCATTCCTTGGGAAGAAGATCAAGGATGCTGTCGTTACTGTGCCCGgtgagtatca ... caacccgcagCTTACTTCAATGATGCCCAGAGGCAGGCTACAAAGGATGCTGGCGTTATTG
EST: TGAAGCATTCCTTGGGAAGAAGATCAAGGATGCTGTCGTTACTGTGCCTG CTTACTTCAATGATGCCCANAAGCAGGCTACAAAAGATGCTGGCGTTATTGEST: gi|110703620|gb|EE080624.1|EE080624
genomic: TGAAGCATTCCTTGGGAAGAAGATCAAGGATGCTGTCGTTACTGTGCCCGgtgagtatca ... caacccgcagCTTACTTCAATGATGCCCAGAGGCAGGCTACAAAGGATGCTGGCGTTATTG
EST: TGAAGCATTCCTTGGGAAGAAGATCAAGGATGCTGTCGTTACTGTGCCTG CTTACTTCAATGATGCCCAGAAGCAGGCTACAAAGGATGCTGGCGTTATTGEST: gi|29782532|gb|CB347920.2|CB347920
genomic: TGAAGCATTCCTTGGGAAGAAGATCAAGGATGCTGTCGTTACTGTGCCCGgtgagtatca ... caacccgcagCTTACTTCAATGATGCCCAGAGGCAGGCTACAAAGGATGCTGGCGTTATTG
EST: TGAAGCATTCCTTGGGAAGAAGATCAAGGATGCTGTCGTTACTGTGCCCG CTTACTTCAATGATGCCCAGAGGCAGGCTACAAAGGATGCTGGCGTTATTGEST: gi|71861883|gb|DT010938.1|DT010938
genomic: TGAAGCATTCCTTGGGAAGAAGATCAAGGATGCTGTCGTTACTGTGCCCGgtgagtatca ... caacccgcagCTTACTTCAATGATGCCCAGAGGCAGGCTACAAAGGATGCTGGCGTTATTG
EST: TGAAGCATTCCTTGGGAAGAAGATCAAGGATGCTGTCGTTACTGTGCCCG CTTACTTCAATGATGCCCAGAGGCAGGCTACAAAGGATGCTGGCGTTATTGEST: gi|33401982|gb|CF207609.1|CF207609
genomic: TGAAGCATTCCTTGGGAAGAAGATCAAGGATGCTGTCGTTACTGTGCCCGgtgagtatca ... caacccgcagCTTACTTCAATGATGCCCAGAGGCAGGCTACAAAGGATGCTGGCGTTATTG
EST: TGAAGCATTCCTTGGGAAGAAGATCAAGGATGCTGTCGTTACTGTGCCTG CTTACTTCAATGATGCCCAGAGGCAGGCTACAAAGGATGCTGGCGTTATTGEST: gi|110687283|gb|EE064556.1|EE064556
genomic: TGAAGCATTCCTTGGGAAGAAGATCAAGGATGCTGTCGTTACTGTGCCCGgtgagtatca ... caacccgcagCTTACTTCAATGATGCCCAGAGGCAGGCTACAAAGGATGCTGGCGTTATTG
EST: TGAAGCATTCCTTGGGAAGAAGATCAAGGATGCTGTCGTTACTGTGCCCG CTTACTTCAATGATGCCCAGAGGCAGGCTACAAAGGATGCTGGCGTTATTG
genomic: TGAAGCATTCCTTGGGAAGAAGATCAAGGATGCTGTCGTTACTGTGCCCGgtgagtatca ... caacccgcagCTTACTTCAATGATGCCCAGAGGCAGGCTACAAAGGATGCTGGCGTTATTG
agcattttgttcattaggatgttttactcatattagctttccatgcaacccgcagCTTACTTCAATGATGCCCAGAGGCAGGCTACAAAGGATGCTGGCGTTATTGCTGGCCTGAATGTTGCACGAATTATTAATGAGCCAACTGCTGCAGCTAT
ttttactcatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtatcactcttctagatataacgtgtgaggttttgaactgcccgcttacactcttcttgaaatgtgaattagcattttgttcattaggatgttttactcatattagctttccatgcaacccgcagCTTACTTCAATGATGCCCAGAGGCAGGCTACAAAGGATGCTGGCGTTATTGCTGGCCTGAATGTTGCACGAATTATTAATGAGCCAACTGCTGCAGCTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT