Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagctgaaactgtgatgtgaatgtcatatctggttctcttctttttcccttctctgttctaatgcacatatgtacttggccatgcttttaaaccagaaccagATTTGCAATGAAGGTCGCCAGAATGCCTTGGCTGAAATCTTGGAGATATTTACAGTGGTATGTGAAACTTACAAATTACCTCTGGCTCAGACCTGGGTTC

Basic information

species Vitis vinifera
transcript Vv02s0025g02070.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g02070.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA20G29960.1 (Glycine max), 3'ss of exon 5
-----------------------gtgagctgaaactgtgatgtgaatgtcatatctggttctcttctttttccc-ttctctgttctaatgcacatatgtacttggccatgcttttaaaccagaaccagATTTGCAATGAAGGTCGCCAGAATGCCTTGGCTGAAATCTTGGAGATATTTACAGTGGTATGTGAAACTTACAAATTACCTCTGGCTCAGACCTGGGTTC
                          | |   | |||| || |  | || |||| || |  | |||||| ||     |||| |||| |   | |||   ||||||  ||||||||||||||||      |||| ||||||||||| |||||||| ||  | || |||||||||||||| |||||||||||||||||| |||| ||||||||||| ||||| ||| |||
gtgattttaaccatcatgcatgacaaatccctatctgttatatctaggttatat-tgctgttgttctttatcttaccctctattctcacagatata---acttggtaatgcttttaaaccagA------TTTGTAATGAAGGTCGTCAGAATGCATTATCAGAGATCTTGGAGATATTGACAGTGGTATGTGAAACTCACAATTTACCTCTGGCCCAGACATGGATTC

upper sequence: Vv02s0025g02070.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G37860.1 (Glycine max), 3'ss of exon 3
----------------------gtg-agctgaaactgtgatgtgaatgtcatat--ctggttctcttctttttcccttctctgttctaatgcacatatgtacttggccatgcttttaaaccagaaccagATTTGCAATGAAGGTCGCCAGAATGCCTTGGCTGAAATCTTGGAGATATTTACAGTGGTATGTGAAACTTACAAATTACCTCTGGCTCAGACCTGGGTTC
                       || | |   | |||| || |  | || ||||  ||| |  ||||| | ||  | | ||| |||| |   | | |   ||||| | ||||||||||||||||      |||| ||||||||||| |||||||| ||  | || |||||||||||||| ||||||||||||||||||   || ||||||||||| ||||| ||| |||
gtgattttaaccatcatatatgatgcatccctatctgttatatctaggttatattgctgttattcttcatcttaacct-tctattctcacagataaa---acttgacaatgcttttaaaccagA------TTTGTAATGAAGGTCGTCAGAATGCATTATCAGAGATCTTGGAGATATTGACAGTGGTATGTGAAACTCTTAATTTACCTCTGGCCCAGACATGGATTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttctctgttctaatgcacatatgtacttggccatgcttttaaaccagaaccagATTTGCAATGAAGGTCGCCAGAATGCCTTGGCTGAAATCTTGGAGATATTTACAGTGGTATGTGAAACTTACAAATTACCTCTGGCTCAGACCTGGGTTC
         ttctaat  putative branch site (score: 2)
                                      ttttaaa  TA-rich tract