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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagggccaattgatttattttcaaacgtcaacatccttctttattcaatctaaagcatttttttcctgattattacgttacaaggactgtgtttaaatttctgtagCAAGCTGAGCCTAGAAGTCCTGATCCGTGTACTCCGGAGCCTCCAAGACCCACGGTGCACTCATTTTGCAAGGTTCTAACTGCCTCTGATACTAGCACTC

Basic information

species Vitis vinifera
transcript Vv02s0025g01740.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352777729|gb|FQ466782.1|FQ466782
EST:     AAGAAACAGATGAGGTTTATGCGCAGATTACTTTACTGCCCGAACCAGAT                         CAAGCTGAGCCTAGAAGTCCTGATCCGTGTACTCCGGAGCCTCCCAGACCC
genomic: AAGAAACAGATGAGGTTTATGCGCAAATTACTTTACTGCCAGAACCAGATgtaagggcca ... atttctgtagCAAGCTGAGCCTAGAAGTCCTGATCCGTGTACTCCGGAGCCTCCAAGACCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagcatttttttcctgattattacgttacaaggactgtgtttaaatttctgtagCAAGCTGAGCCTAGAAGTCCTGATCCGTGTACTCCGGAGCCTCCAAGACCCACGGTGCACTCATTTTGCAAGGTTCTAACTGCCTCTGATACTAGCACTC
            tcctgat  putative branch site (score: 3)
                                              tttctgt  putative PPT
                                        tttaaatttctgta  TA-rich tract