Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataacaaaattgatgttgtcttcattacttgatttgctagtattgtaacaactcatttatgttaggctgcatcttattttcatttgattttgggacttcatatttactaagctcggttcattgtcaaaaagATTATGGAGAGCTTGGAGCATGCAATGAAAAGAGGAGCCAATATAATTGCAGAGTATTTGGGAGGTGCTATTACATGTGATGCTCATCATATGACCGATC

Basic information

species Vitis vinifera
transcript Vv02s0025g01730.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g01730.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G02850.2 (Glycine max), 3'ss of exon 3
gtaataac--aaaattgatgttgtcttcattacttgatttgctagtattg-taacaactcatttatgttaggctgcatcttattttcatttgattttgggacttcatatttacta--agctcggttcattgtca-------aaaagATTATGGAGAGCTTGGAGCATGCAATGAAAAGAGGAGCCAATATAATTGCAGAGTATTTGGGAGGTGCTATTACATGTGATGCTCATCATATGACCGATC
|||  |||   ||    |  || ||||     ||  || | |   | ||  ||  || ||        || |    | |   ||||  ||| |  ||     |    |  || |   | || | |||  | |||       ||||| | |||||||||||||||  |||||  ||||| |||||||| ||||| ||||| |||||||| ||||| || || |||||||||||||| ||||| ||||
gtagaaacttgaacccaaaattttcttttacgctatatatacatcttttactagtaattctaaagcaatatggcctaacaagtttttgttttaacttacttttgttcacctaatgacaacttgattctctatcactgaaaaaaaagGTAATGGAGAGCTTGGAGAGTGCAACAAAAAGGGGAGCCAAAATAATAGCAGAATATTTGGGGGGTGCCATAACGTGTGATGCTCATCACATGACTGATC

upper sequence: Vv02s0025g01730.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA05G36690.1 (Glycine max), 3'ss of exon 3
--------gtaataacaaaattgatgttgtcttcat-tacttgatttgctagtattgtaacaactcatttatgttaggctgcatcttattttcatttgattttggg-acttcatatttactaagctcggt-tcattgtcaaaa------agATTATGGAGAGCTTGGAGCATGCAATGAAAAGAGGAGCCAATATAATTGCAGAGTATTTGGGAGGTGCTATTACATGTGATGCTCATCATATGACCGATC
         | |   |||||||    ||  |  ||| | | |  |||||||| | |   | | |  | |   | |   |    | || |||| | ||  |||||   || | ||    |||    ||  | |||  |  ||||      || | |||||||||||||||  |||||  ||||| |||||||  ||||| ||||| |||||||| ||||| || |||||||||| |||||| ||||| ||||
gtagaaccttgaacccaaaattttcttttacaccatatgcatcttttgctagcaattctaaagc--aatatggcttaacaagtttttgttttaacttacttttgttcacctaatgacaacttgattctctatcaccggaaaaaaaaaaaagGTAATGGAGAGCTTGGAGAGTGCAACAAAAAGGGGAGCCAGAATAATAGCAGAATATTTGGGGGGTGCCATAACATGTGATGATCATCACATGACTGATC

upper sequence: Vv02s0025g01730.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G10220.1 (Glycine max), 3'ss of exon 2
gtaataac--aaaattgatgttgtcttcattacttgatttgctagtattg-taacaactcatttatgttaggctgcatcttattttcatttgattttgggacttcatatttactaagctcggttcattgtcaaaaagATTATGGAGAGCTTGGAGCATGCAATGAAAAGAGGAGCCAATATAATTGCAGAGTATTTGGGAGGTGCTATTACATGTGATGCTCATCATATGACCGATC---------------------
|||  |||   ||    |  || ||||     ||  || | |   | ||  ||  || ||        || |    | |   ||||  ||| |  ||     |    |  || | |   |  || ||| || | ||   |    | |  ||||||  |||||  ||||| |||||||| ||||| ||||| |||||||| ||||| || || |||||||||||||| ||||| ||||                     
gtagaaacttgaacccaaaattttcttttacgctatatatacatcttttactagtaattctaaagcaatatggcctaacaagtttttgttttaacttacttttgttcacctaatgacaac--ttgattctctataa--ctgaaaaaaaattggagagTGCAACAAAAAGGGGAGCCAAAATAATAGCAGAATATTTGGG-GGTGCCATAACGTGTGATGCTCATCACATGACTGATCCAAGAGTTGATGGTCTTGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcatttgattttgggacttcatatttactaagctcggttcattgtcaaaaagATTATGGAGAGCTTGGAGCATGCAATGAAAAGAGGAGCCAATATAATTGCAGAGTATTTGGGAGGTGCTATTACATGTGATGCTCATCATATGACCGATC
     atttgat  putative branch site (score: 5)
                    ttcatatttactaa  TA-rich tract