Sequence
atgc intronic sequence ATGC exonic sequence...cagatcaattaaatactggcatttttaatgctttggtctaatgaattggtttccctttcttctggtctgtatgattggtctgttctccgtaatattgcagGTATGTCCCCAATCCTGTTTTGGTCATAATTGATGTCCAACCAAAAGAGCTAGGAATTCCCACGAAGGCTTACTATGCTGTTGAGGAGGTGAAAGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g01490.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G061745_T03 (Zea mays), 3'ss of exon 3
-cagatcaattaaatactggcatttttaatgctttggtctaatgaattggtt-tccctttcttctggtctgtatgattggtctgttctccgtaatattgcagGTATGTCCCCAATCCTGTTTTGGTCATAATTGATGTCCAACCAAAAGAGCTAGGAATTCCCACGAAGGCTTACTATGCTGTTGAGGAGGTGAAAGAG
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taaagttaatta--tgctagcttcgtcactgggtgctcctgctgtattgcctgtggcgcttctcacagctgtttattccaattctcgctctccaaattgcagTTATGTTCCTAATCCAGTCTTGGTGATTATTGATGTCCAACCCAAGGAGCTGGGTATACCGACCAAAGCGTACTACGCTGTGGAGGAGGTTAAAGAG
upper sequence: Vv02s0025g01490.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G11270.1 (Arabidopsis thaliana), 3'ss of exon 3
---------------------------------------------------------------------cagatcaattaaatactggcatttttaatgcttt--ggtctaa-tgaattggtttccctttcttctggtctgtatgatt---ggtctgttctccgt----aatattgcagGTATGTCCCCAATCCTGTTTTGGTCATAATTGATGTCCAACCAAAAGAGCTAGGAATTCCCACGAAGGCTTACTATGCTGTTGAGGAGGTGAAAGAG
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gtaagaccaaaatcagtctaaaatatgagatatgatggtctaatctaatatatggtttggtggtctgtttaagttatatatgtacaaacgttttaaagcattcacaatctatctctcctctcttgctagaccttatttctgtattacttcggttttaatcttagtttctggtgttgcagCTACGTTCCAAATCCAGTGTTGGTCATTATTGATGTCCAACCTAAAGAACTTGGAATCCCCACAAAAGCATACTATGCGGTTGAGGAGGTGAAAGAG
upper sequence: Vv02s0025g01490.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G11270.2 (Arabidopsis thaliana), 3'ss of exon 3
---------------------------------------------------------------------cagatcaattaaatactggcatttttaatgcttt--ggtctaa-tgaattggtttccctttcttctggtctgtatgatt---ggtctgttctccgt----aatattgcagGTATGTCCCCAATCCTGTTTTGGTCATAATTGATGTCCAACCAAAAGAGCTAGGAATTCCCACGAAGGCTTACTATGCTGTTGAGGAGGTGAAAGAG
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gtaagaccaaaatcagtctaaaatatgagatatgatggtctaatctaatatatggtttggtggtctgtttaagttatatatgtacaaacgttttaaagcattcacaatctatctctcctctcttgctagaccttatttctgtattacttcggttttaatcttagtttctggtgttgcagCTACGTTCCAAATCCAGTGTTGGTCATTATTGATGTCCAACCTAAAGAACTTGGAATCCCCACAAAAGCATACTATGCGGTTGAGGAG--------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttggtttccctttcttctggtctgtatgattggtctgttctccgtaatattgcagGTATGTCCCCAATCCTGTTTTGGTCATAATTGATGTCCAACCAAAAGAGCTAGGAATTCCCACGAAGGCTTACTATGCTGTTGAGGAGGTGAAAGAG
taatatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cagatcaattaaatactggcatttttaatgctttggtctaatgaattggtttccctttcttctggtctgtatgattggtctgttctccgtaatattgcagGTATGTCCCCAATCCTGTTTTGGTCATAATTGATGTCCAACCAAAAGAGCTAGGAATTCCCACGAAGGCTTACTATGCTGTTGAGGAGGTGAAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - aattaaa
- - - - - - - - -ggcattt
- - - - - - - - - - - - - - tgctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgattgg