1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cacctgtttataattggtaatctattacttgaacattaataaagcaagaactttcattttgattgaattgtatgtcctattaacttagcttactttacagGTTAGTGCATATTCAGATGGCCACGTGAAAGTCTATGAGCTCCTAGATCCATTGGAACTGAAGAGTTGGCAACTTCAG
species | Vitis vinifera |
transcript | Vv02s0025g01250.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATAAAGTGCTCGATGTCCAATTTGGAGTCTCACCAACAAGTTTGAAAATG GTTAGTGCATATTCAGATGGCCACGTGAAAGTCTATGAGCTCCTAGATCCAEST: gi|161709478|gb|FC059723.1|FC059723
genomic: ATAAAGTGCTCGATGTCCAATTTGGAGTCTCACCAACAAGTTTGAAAATGgtgaactgtg ... tactttacagGTTAGTGCATATTCAGATGGCCACGTGAAAGTCTATGAGCTCCTAGATCCA
EST: ATAAAGTGCTCGATGTCCAATTTGGAGTCTCACCAACAAGTTTGAAAATG GTTAGTGCATATTCAGATGGCCACGTGAAAGTCTATGAGCTCCTAGATCCAEST: gi|71873900|gb|DT022955.1|DT022955
genomic: ATAAAGTGCTCGATGTCCAATTTGGAGTCTCACCAACAAGTTTGAAAATGgtgaactgtg ... tactttacagGTTAGTGCATATTCAGATGGCCACGTGAAAGTCTATGAGCTCCTAGATCCA
EST: ATAAAGTGCTCGATGTCCAATTTGGAGTCTCACCAACAAGTTTGAAAATG GTTAGTGCATATTCAGATGGCCACGTGAAAGTCTATGAGCTCCTAGATCCAEST: gi|77578329|gb|DV217952.1|DV217952
genomic: ATAAAGTGCTCGATGTCCAATTTGGAGTCTCACCAACAAGTTTGAAAATGgtgaactgtg ... tactttacagGTTAGTGCATATTCAGATGGCCACGTGAAAGTCTATGAGCTCCTAGATCCA
EST: ATAAAGTGCTCGATGTCCAATTTGGAGTCTCACCAACAAGTTTGAAAATG GTTAGTGCATATTCAGATGGCCACGTGAAAGTCTATGAGCTCCTAGATCCAEST: gi|161706013|gb|FC056710.1|FC056710
genomic: ATAAAGTGCTCGATGTCCAATTTGGAGTCTCACCAACAAGTTTGAAAATGgtgaactgtg ... tactttacagGTTAGTGCATATTCAGATGGCCACGTGAAAGTCTATGAGCTCCTAGATCCA
EST: ATAAAGTGCTCGATGTCTAATTTGGAGTCTCACCAACAAGTTTGAAAATG GTTAGTGCATATTCAGATGGCCACGTGAAAGTCTAT
genomic: ATAAAGTGCTCGATGTCCAATTTGGAGTCTCACCAACAAGTTTGAAAATGgtgaactgtg ... tactttacagGTTAGTGCATATTCAGATGGCCACGTGAAAGTCTAT
aagaactttcattttgattgaattgtatgtcctattaacttagcttactttacagGTTAGTGCATATTCAGATGGCCACGTGAAAGTCTATGAGCTCCTAGATCCATTGGAACTGAAGAGTTGGCAACTTCAG
cttacttt CT-rich tract
attttgattgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacctgtttataattggtaatctattacttgaacattaataaagcaagaactttcattttgattgaattgtatgtcctattaacttagcttactttacagGTTAGTGCATATTCAGATGGCCACGTGAAAGTCTATGAGCTCCTAGATCCATTGGAACTGAAGAGTTGGCAACTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
cacctgt
- - - - - - - - - - - - - - - -aacattaa
- - - - - - - - - - - - - - - - - - - - aaagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtatgtc