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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taagcacatttgaggggaaaaagttacaagctccttgttacttaatggaagctgtttgtgagttagcattggtagtgttcatatatttgttcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCTCTGGTGCCTGAGATTGCTCACATGTACAAGACAGACAGGAGCAAGTACG

Basic information

species Vitis vinifera
transcript Vv02s0025g01050.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110723180|gb|EE100194.1|EE100194
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|110701145|gb|EE078418.1|EE078418
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCAATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|110694210|gb|EE071119.1|EE071119
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|30302134|gb|CB978928.1|CB978928
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|37183571|gb|CF602925.1|CF602925
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|110732791|gb|EE108387.1|EE108387
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|27755206|gb|CB035961.1|CB035961
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCAATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|32459956|gb|CD801130.1|CD801130
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCAATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|110358580|gb|EC922893.1|EC922893
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|110726912|gb|EE103108.1|EE103108
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCAATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|32250370|gb|CD716189.1|CD716189
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCAATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|26263872|gb|CA814935.1|CA814935
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|110697591|gb|EE074711.1|EE074711
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|110429311|gb|EC995802.1|EC995802
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCAATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|351027307|gb|FQ444556.1|FQ444556
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCAATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|110725346|gb|EE101739.1|EE101739
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCAATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|110725824|gb|EE102727.1|EE102727
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|110730922|gb|EE108558.1|EE108558
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|110695261|gb|EE073078.1|EE073078
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|110694859|gb|EE072355.1|EE072355
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|351016609|gb|FQ424036.1|FQ424036
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCAATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|30305566|gb|CB982360.1|CB982360
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCAATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|110692728|gb|EE068336.1|EE068336
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|110402540|gb|EC960385.1|EC960385
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|110400361|gb|EC966919.1|EC966919
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCAATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|110693235|gb|EE069290.1|EE069290
EST:     TATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: TATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|110374620|gb|EC939511.1|EC939511
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCAATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|110386764|gb|EC951386.1|EC951386
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|110717336|gb|EE093103.1|EE093103
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCAATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|161718484|gb|FC066334.1|FC066334
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCAATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|32250128|gb|CD715947.1|CD715947
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCAATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|110729612|gb|EE105744.1|EE105744
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|30302205|gb|CB978999.1|CB978999
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|110414671|gb|EC980512.1|EC980512
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCAATCTGTTTTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|110370163|gb|EC934344.1|EC934344
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|110697711|gb|EE074936.1|EE074936
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|110380458|gb|EC945726.1|EC945726
EST:     TTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: TTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|45770869|gb|CN006721.1|CN006721
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCAATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|110718016|gb|EE094378.1|EE094378
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCAATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|110703502|gb|EE080402.1|EE080402
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|110695206|gb|EE072959.1|EE072959
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|110690461|gb|EE067581.1|EE067581
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|110709514|gb|EE085051.1|EE085051
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCAATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|110383955|gb|EC948363.1|EC948363
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|30134279|gb|CB919617.1|CB919617
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCAATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|30137594|gb|CB922932.1|CB922932
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCAATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|26265783|gb|CA816846.1|CA816846
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|110688808|gb|EE067784.1|EE067784
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|110368257|gb|EC932228.1|EC932228
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCAATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|71867528|gb|DT016583.1|DT016583
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|32459887|gb|CD801061.1|CD801061
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCAATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|110366411|gb|EC930316.1|EC930316
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCAATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|110397584|gb|EC963337.1|EC963337
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCAATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|30320592|gb|CD003854.1|CD003854
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCAATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|352794746|gb|FQ475244.1|FQ475244
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCAATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|110698439|gb|EE075937.1|EE075937
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|30305499|gb|CB982293.1|CB982293
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCAATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|37186801|gb|CF606154.1|CF606154
EST:     GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
EST: gi|30296851|gb|CB973645.1|CB973645
EST:     GCCCTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAG                         GTGTTGCTCTCAATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT
genomic: GCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTTCCAAGgtcaattgtt ... tcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggaagctgtttgtgagttagcattggtagtgttcatatatttgttcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCTCTGGTGCCTGAGATTGCTCACATGTACAAGACAGACAGGAGCAAGTACG
                                        tttgttc  CT-rich tract
                                   atatatttgttcatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
taagcacatttgaggggaaaaagttacaagctccttgttacttaatggaagctgtttgtgagttagcattggtagtgttcatatatttgttcattggcagGTGTTGCTCTCGATCTGTTCTCTTCTAACGGATCCAAATCCTGATGATCCTCTGGTGCCTGAGATTGCTCACATGTACAAGACAGACAGGAGCAAGTACG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
-aagcaca
- - - - - - - -ggaaaaa
- - - - - - - - - - - - - - - ctccttg
- - - - - - - - - - - - - - - - - - - - - -aatggaa
- - - - - - - - - - - - - - - - - - - - - - - - - -ctgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtagtg