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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctaattcatgacaagttttggcatgatatataaaaatatttagtcattgtcatgtgtcctttgatatagtacttatgagtgtaacaatatgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGATGACTTGCATTTGGTGGAATCTATCTTGGATTCCGCAAAGGATGAGTATG

Basic information

species Vitis vinifera
transcript Vv02s0025g01000.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g01000.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA05G37160.1 (Glycine max), 3'ss of exon 3
-----tctaattcatgacaagttttggcatgat---atataaaaatatttagtcattgtcatgtgtcctttgatatagtacttatgagtgtaacaatatgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGATGACTTGCATTTGGTGGAATCTATCTTGGATTCCGCAAAGGATGAGTATG
      ||   | |||  |  || ||  || ||   ||  |  |   | || |  |    |||||  ||| |  |||  || || | |        | |||||| ||| |||| || ||| |||| |||||| ||||||||||| | ||||||||||||||| |||||||||| ||   |    ||||||| ||     | |||||||
tgaaacctttgtaatgctatattctgatattattttatggactaccttctactagtaagaatgtggacttggg-atataacgtaagggc-------tgtgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCTGTCTTATTGAGATGTCGGAAAGATGACCTGCATTTGGTAGAGCATGAGCTGGATTCAGCTGCCCAGGAGTATG

upper sequence: Vv02s0025g01000.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA05G37190.1 (Glycine max), 3'ss of exon 3
-tctaattcatgacaagttttggcatgatatataaaaatatttagtcattgtcatgtgtcctttgatatagtacttatgagtgtaacaata----tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGATGACTTGCATTTGGTGGAATCTATCTTGGATTCCGCAAAGGATGAGTATG
 |  ||| | |   ||    ||  ||  | |   |  || ||||   | |  | |   | |||    ||      || ||   ||| |  |    |||||||||| |||| || ||| |||| |||||| ||||||||||| | ||||||||||||||| |||| ||||| ||     |  ||||||| ||     | |||||||
tttcaatcctttgtaa----tgctatattttgctattat-tttatgaactaacttccatgcttaagcatgtggactaggaagataatataagggctgtgttgcagTGTTTGCTAAGACTGAAAGAACCTTCTGTCTTATTGAGATGTCGGAAAGATGACCTGCACTTGGTAGAGAACGTGCTGGATTCAGCTGCTCAGGAGTATG

upper sequence: Vv02s0025g01000.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G02390.2 (Glycine max), 3'ss of exon 3
---tctaattcatgacaagttttggcatgatatataaaaatatttagtcattgt-catgtgtcctttgatatagtacttatgagtgtaacaatatgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGATGACTTGCATTTGGTGGAATCTATCTTGGATTCCGCAAAGGATGAGTATG
   |    | || |||   |||        | ||     |||||| |  ||| | | |  ||   | ||  | | |  ||    | |||  |  |||||||||| |||| || ||| |||| || ||| ||||||||||| | ||||||||||||||| |||| ||||| ||   | |  ||||||| ||     | |||||||
cccttgtctacacgacctttttcaatcccttgtaatgctatattttgctattatgcgtaagtatgtggacttggaagata---atataaggac-tgtgttgcagTGTTTGCTAAGACTGAAAGAGCCTTCTGTCTTATTGAGATGTCGGAAAGATGACCTGCACTTGGTAGAGAATGTGCTGGATTCAGCTGCTCAGGAGTATG

upper sequence: Vv02s0025g01000.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G02420.1 (Glycine max), 3'ss of exon 3
-----tctaattcatgac-aagttttggcatgatatataaaaatatttagtcattgtcatgtgt-cctttgatatagtacttatgagtgtaacaatatgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGATGACTTGCATTTGGTGGAATCTATCTTGGATTCCGCAAAGGATGAGTATG
      ||   | ||| | |  || ||   | || |     | ||  |  |  |    |||||  | ||||  |||  || || | |        | |||||| ||| |||| || ||| |||| |||||| ||||||||||| | ||||||||||||||| |||| ||||| ||   | |  ||||||| ||     | |||||||
tcaatccttcataatgcctatattctgatgtcattttatggactaccttctactaagaatgtggacttttgggatataacataagggc-------tgtgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCTGTCTTATTGAGATGTCGGAAAGATGACCTGCACTTGGTAGAGCATGTGCTGGATTCAGCTGCACAGGAGTATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110724154|gb|EE099733.1|EE099733
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|32247497|gb|CD713316.1|CD713316
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|30305484|gb|CB982278.1|CB982278
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|22008693|gb|BQ793727.1|BQ793727
EST:     TATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: TATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|34548173|gb|CF516405.1|CF516405
EST:     GCCATGATCACCATGTCTATAAGAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|34543306|gb|CF511538.1|CF511538
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTGAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|34416720|gb|CF415474.1|CF415474
EST:     CCATGATCACCCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: CCATGATCA-CCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|110715183|gb|EE092944.1|EE092944
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|71871411|gb|DT020466.1|DT020466
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTGAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|110716107|gb|EE090797.1|EE090797
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|110368471|gb|EC932450.1|EC932450
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTGAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|110372656|gb|EC936840.1|EC936840
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|110702233|gb|EE080709.1|EE080709
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|71856952|gb|DT006007.1|DT006007
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAA
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAA
EST: gi|37184964|gb|CF604317.1|CF604317
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|110401740|gb|EC968358.1|EC968358
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTGAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|30127506|gb|CB912845.1|CB912845
EST:     GCCATGATCACCATGTCTATAANAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|32272492|gb|CD721651.1|CD721651
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|110422908|gb|EC989242.1|EC989242
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|110356758|gb|EC919820.1|EC919820
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|110389466|gb|EC954304.1|EC954304
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTGAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|30304816|gb|CB981610.1|CB981610
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTGAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|110361925|gb|EC925431.1|EC925431
EST:     GCCATGATCACCATGTCTATAAAAGGCTTTTGAGAGATCTTGTGGTTCAG                         AGTTTACTGAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|110692843|gb|EE068555.1|EE068555
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|110428443|gb|EC994915.1|EC994915
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|110379319|gb|EC944505.1|EC944505
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTGAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|110717153|gb|EE092759.1|EE092759
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|110410225|gb|EC975903.1|EC975903
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|110403040|gb|EC964106.1|EC964106
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|110707645|gb|EE084278.1|EE084278
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|110359807|gb|EC921968.1|EC921968
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|71868568|gb|DT017623.1|DT017623
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTGAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|110396071|gb|EC961746.1|EC961746
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|71859650|gb|DT008705.1|DT008705
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTGAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|110388165|gb|EC952885.1|EC952885
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|110386435|gb|EC951029.1|EC951029
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTGAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|110709820|gb|EE085616.1|EE085616
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAA                         AGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|110732725|gb|EE108265.1|EE108265
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAA                         AGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|30323619|gb|CD006881.1|CD006881
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|110699974|gb|EE077482.1|EE077482
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTCAGATTGAAGGAACCT--TGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|110373529|gb|EC937773.1|EC937773
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|110406384|gb|EC971955.1|EC971955
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|110414207|gb|EC980034.1|EC980034
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|110369246|gb|EC933400.1|EC933400
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
EST: gi|34543391|gb|CF511623.1|CF511623
EST:     GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAG                         AGTTTACTGAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT
genomic: GCCATGATCACCATGTCTATAAAAGGCTTCTGAGAGATCTTGTGGTTCAGgtcagtatag ... tgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattgtcatgtgtcctttgatatagtacttatgagtgtaacaatatgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGATGACTTGCATTTGGTGGAATCTATCTTGGATTCCGCAAAGGATGAGTATG
                                  gtgtaac  putative branch site (score: 3)
               tttgatata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tctaattcatgacaagttttggcatgatatataaaaatatttagtcattgtcatgtgtcctttgatatagtacttatgagtgtaacaatatgtgttgcagAGTTTACTCAGATTGAAGGAACCTGCTGTCTTATTGCGTTGTCGGAAAGATGACTTGCATTTGGTGGAATCTATCTTGGATTCCGCAAAGGATGAGTATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - tcatgac
- - - - - - - - - - -gcatgat
- - - - - - - - - - - - - - - - aaaaata
- - - - - - - - - - - - - - - - - - - - - - -cattgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaacaa