1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ccttgttgctgattccaggttatgctcagtagttaatatatcatttactttatcttcaaatttactgattattgttgctcaattcacttttcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
species | Vitis vinifera |
transcript | Vv02s0012g02790.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAEST: gi|351046180|gb|FQ442558.1|FQ442558
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAEST: gi|110705231|gb|EE081878.1|EE081878
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAEST: gi|352794074|gb|FQ479316.1|FQ479316
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAEST: gi|26258680|gb|CA809743.1|CA809743
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAEST: gi|351034454|gb|FQ463267.1|FQ463267
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: GAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAEST: gi|351034375|gb|FQ463188.1|FQ463188
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAEST: gi|351037902|gb|FQ465140.1|FQ465140
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: GAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAEST: gi|110364860|gb|EC928418.1|EC928418
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAEST: gi|110704711|gb|EE081697.1|EE081697
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAEST: gi|351052620|gb|FQ452532.1|FQ452532
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: NNGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAEST: gi|352790200|gb|FQ481399.1|FQ481399
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: GAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAEST: gi|351055369|gb|FQ441967.1|FQ441967
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: GAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAEST: gi|37190420|gb|CF609769.1|CF609769
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAEST: gi|351036160|gb|FQ464005.1|FQ464005
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: GAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAEST: gi|351016089|gb|FQ432044.1|FQ432044
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAEST: gi|110392190|gb|EC957433.1|EC957433
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAEST: gi|71884210|gb|DT033265.1|DT033265
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAEST: gi|351027248|gb|FQ444497.1|FQ444497
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAEST: gi|351044367|gb|FQ452919.1|FQ452919
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: GAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAEST: gi|71874794|gb|DT023849.1|DT023849
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAEST: gi|351033642|gb|FQ462172.1|FQ462172
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAEST: gi|351032807|gb|FQ461696.1|FQ461696
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: GAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAEST: gi|352798335|gb|FQ480360.1|FQ480360
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAEST: gi|351033496|gb|FQ462147.1|FQ462147
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAEST: gi|351039606|gb|FQ461473.1|FQ461473
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: GAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAEST: gi|26257869|gb|CA808932.1|CA808932
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAEST: gi|352790134|gb|FQ481333.1|FQ481333
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: GAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAEST: gi|110724316|gb|EE100035.1|EE100035
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAEST: gi|351056762|gb|FQ443389.1|FQ443389
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: GAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAEST: gi|351025681|gb|FQ426695.1|FQ426695
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAEST: gi|351054105|gb|FQ450187.1|FQ450187
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAEST: gi|351047341|gb|FQ451853.1|FQ451853
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG GACATAAAACGGAGGGAAGATGCTGTGTCAAAAAEST: gi|351044729|gb|FQ443260.1|FQ443260
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
EST: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAG GACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
genomic: AAGAGAAAGAACTTGCAGCTTGGGAGGCTGATTTGAAACGGAAAGAAAAGgttacctata ... tcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
tactttatcttcaaatttactgattattgttgctcaattcacttttcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
tactgat putative branch site (score: 2)
ttcacttttc putative PPT
aaatttactgattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttgttgctgattccaggttatgctcagtagttaatatatcatttactttatcttcaaatttactgattattgttgctcaattcacttttcaaccacagGACATAAAACGGAGGGAAGATGCTGTGTCAAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- -tgttgct
- - - - - - - - - - tatgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caattca