1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gagtagttttggcctaataaatgaatgcaaatcagataggatatgtgctttaatccattattgaggtgagcttacagtaatagttgctttaagatctcagTGAATCAAGGAATCCTTTCGTTGAGCAAGCAGTGCAATACACTATAGCAGCTGCACGTGCAACACTTGACAAGAATAATAATGATTTTTTACACACAAAA
species | Vitis vinifera |
transcript | Vv02s0012g02530.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGTACAAAATGTCACTAAAAAATTTAATGCTCCAATGTGTTTCTTCAAG TGAATCAAGGAATCCTTTCGTTGAGCAAGCAGTGCAATACACTATAGCAGCEST: gi|110707464|gb|EE083889.1|EE083889
genomic: ATGTACAAAATGTCACTAAAAAATTTAATGCTCCAATGTGTTTCTTCAAGgcaagttttt ... aagatctcagTGAATCAAGGAATCCTTTCGTTGAGCAAGCAGTGCAATACACTATAGCAGC
EST: ATGTACAAAATGTCACTAAAAAATTTAATGCTCCAATGTGTCTCTCCAAG TGAATCAAGGAATCCTTTCGTTGAGCAAGCAGTGCAATACACTATAGCAGCEST: gi|27584900|gb|CB007595.1|CB007595
genomic: ATGTACAAAATGTCACTAAAAAATTTAATGCTCCAATGTGTTTCTTCAAGgcaagttttt ... aagatctcagTGAATCAAGGAATCCTTTCGTTGAGCAAGCAGTGCAATACACTATAGCAGC
EST: ATGTACAAAATGTCACTAAAAAATTTAATGCTCCAATGTGTCTCTCCAAG TGAATCAAGGAATCCTTTCGTTGAGCAAGCAGTGCAATACACTATAGCAGCEST: gi|294964885|gb|GW838688.1|GW838688
genomic: ATGTACAAAATGTCACTAAAAAATTTAATGCTCCAATGTGTTTCTTCAAGgcaagttttt ... aagatctcagTGAATCAAGGAATCCTTTCGTTGAGCAAGCAGTGCAATACACTATAGCAGC
EST: ATGTACAAAATGTCACTAAAAAATTTAATGCTCCAATGTGTTTCTTCAAG TGAATCAAGGAATCCTTTCGTTGAGCAAGCAGTGCAATACACTATAGCAGC
genomic: ATGTACAAAATGTCACTAAAAAATTTAATGCTCCAATGTGTTTCTTCAAGgcaagttttt ... aagatctcagTGAATCAAGGAATCCTTTCGTTGAGCAAGCAGTGCAATACACTATAGCAGC
tgctttaatccattattgaggtgagcttacagtaatagttgctttaagatctcagTGAATCAAGGAATCCTTTCGTTGAGCAAGCAGTGCAATACACTATAGCAGCTGCACGTGCAACACTTGACAAGAATAATAATGATTTTTTACACACAAAA
agcttac putative branch site (score: 3)
attattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagtagttttggcctaataaatgaatgcaaatcagataggatatgtgctttaatccattattgaggtgagcttacagtaatagttgctttaagatctcagTGAATCAAGGAATCCTTTCGTTGAGCAAGCAGTGCAATACACTATAGCAGCTGCACGTGCAACACTTGACAAGAATAATAATGATTTTTTACACACAAAA
- - - - - - - -aataaat
- - - - - - - - - - - gaatgca
- - - - - - - - - - - - - - -aatcaga
- - - - - - - - - - - - - - - - - - - - -tatgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - -aatccat