1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgagaaaagcttagttaataacaaaaagaaagggttgttatttatttaaacattacgtagtttatgagcctaatgttgtttgatgatcatcttgctgcagTAATAATGTATGTTCTTCTTCCCATGCCTTTGCTGTTCTTTGCTGGGTCTGACACTTCTTCTCTCTTTTCTGAATCTGGGAATAG
species | Vitis vinifera |
transcript | Vv02s0012g00600.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCGTGTGCTCTGTTCAACAATTGGTGGCCTATGCTGACAG TAATAATGTATGTTCTTCTTCCCATGCCTTTGCTGTTCTTTGCTGGGTCTGEST: gi|110706618|gb|EE082302.1|EE082302
genomic: GCGTGTGCTCTGTTCAACAATTGGTGGCCTATGCTGACAGgtaatcaaag ... cttgctgcagTAATAATGTATGTTCTTCTTCCCATGCCTTTGCTGTTCTTTGCTGGGTCTG
EST: GCGTGTGCTCTGTTCAACAATTGGTGGCCTATGCTGACAG TAATAATGTATGTTCTTCTTCCCATGCCTTTGCTGTTCTTTGCTGGGTCTGEST: gi|30126226|gb|CB911565.1|CB911565
genomic: GCGTGTGCTCTGTTCAACAATTGGTGGCCTATGCTGACAGgtaatcaaag ... cttgctgcagTAATAATGTATGTTCTTCTTCCCATGCCTTTGCTGTTCTTTGCTGGGTCTG
EST: GCGTGTGCTCTGTTCAACAATTGGTGGCCTATGCTGACAG TAATAATGTATGTTCTTCTTCCCATGCCTTTGCTGTTCTTTGCTGGGTCTG
genomic: GCGTGTGCTCTGTTCAACAATTGGTGGCCTATGCTGACAGgtaatcaaag ... cttgctgcagTAATAATGTATGTTCTTCTTCCCATGCCTTTGCTGTTCTTTGCTGGGTCTG
ttaaacattacgtagtttatgagcctaatgttgtttgatgatcatcttgctgcagTAATAATGTATGTTCTTCTTCCCATGCCTTTGCTGTTCTTTGCTGGGTCTGACACTTCTTCTCTCTTTTCTGAATCTGGGAATAG
tcatctt CT-rich tract
tagtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagaaaagcttagttaataacaaaaagaaagggttgttatttatttaaacattacgtagtttatgagcctaatgttgtttgatgatcatcttgctgcagTAATAATGTATGTTCTTCTTCCCATGCCTTTGCTGTTCTTTGCTGGGTCTGACACTTCTTCTCTCTTTTCTGAATCTGGGAATAG
- -gaaaagc
- - - - - - - - aataaca
- - - - - - - - - - - - aaagaaa
- - - - - - - - - - - - - - - -gggttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctaatg