1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...actgagaaatgatgggttgaacaatctacgtcatttctaaattggatgctagaaatttacatgtaaattacatcttcttcatctgtatttttctcttcagACTCAAGGGCGTGAATCCATTGCAGCTAAACTTGTTGCAAATGTTATCACCAAAGCAGGTGCGGACCGTGTTCTTGCTTGTGATCTTCATTCTGGGCAGT
species | Vitis vinifera |
transcript | Vv02s0012g00530.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGTCACAGCAGTAGTTCCGTATTTTGGCTATGCCAGATCTGATGGAAAG ACTCAAGGGCGTGAATCCATTGCAGCTAAACTTGTTGCAAATGTTATCACCEST: gi|351033460|gb|FQ462111.1|FQ462111
genomic: CTGTCACAGCAGTAGTTCCGTATTTTGGCTATGCCAGATCTGATAGAAAGgcaagtttta ... ttctcttcagACTCAAGGGCGTGAATCCATTGCAGCTAAACTTGTTGCAAATGTTATCACC
EST: CTGTCACAGCAGTAGTTCCGTATTTTGGCTATGCCAGATCTGATAGAAAG ACTCAAGGGCGTGAATCCATTGCAGCTAAACTTGTTGCAAATGTTATCACCEST: gi|161719281|gb|FC064821.1|FC064821
genomic: CTGTCACAGCAGTAGTTCCGTATTTTGGCTATGCCAGATCTGATAGAAAGgcaagtttta ... ttctcttcagACTCAAGGGCGTGAATCCATTGCAGCTAAACTTGTTGCAAATGTTATCACC
EST: CTGTCACAGCAGTAGTTCCGTATTTTGGCTATGCCAGATCTGATAGAAAG ACTCAAGGGCGTGAATCCATTGCAGCTAAACTTGTTGEST: gi|110376340|gb|EC941395.1|EC941395
genomic: CTGTCACAGCAGTAGTTCCGTATTTTGGCTATGCCAGATCTGATAGAAAGgcaagtttta ... ttctcttcagACTCAAGGGCGTGAATCCATTGCAGCTAAACTTGTTG
EST: CTGTCACAGCAGTAGTTCCGTATTTTGGCTATGCCAGATCTGATAGAAAG ACTCAAGGGCGTGAATCCATTGCAGCTAAACTTGTTGCAAATGTTATCACCEST: gi|30253361|gb|CB970912.1|CB970912
genomic: CTGTCACAGCAGTAGTTCCGTATTTTGGCTATGCCAGATCTGATAGAAAGgcaagtttta ... ttctcttcagACTCAAGGGCGTGAATCCATTGCAGCTAAACTTGTTGCAAATGTTATCACC
EST: CTGTCACAGCAGTAGTTCCGTATTTTGGCTATGCCAGATCTGATAGAAAG ACTCAAGGGCGTGAATCCATTGCAGCTAAACTTGTTGCAAATGTTATCACCEST: gi|30253440|gb|CB970991.1|CB970991
genomic: CTGTCACAGCAGTAGTTCCGTATTTTGGCTATGCCAGATCTGATAGAAAGgcaagtttta ... ttctcttcagACTCAAGGGCGTGAATCCATTGCAGCTAAACTTGTTGCAAATGTTATCACC
EST: CAGCAGTAGTTCCGTATTTTGGCTATGCCAGATCTGATAGAAAG ACTCAAGGGCGTGAATCCATTGCAGCTAAACTTGTTGCAAATGTTATCACCEST: gi|110698297|gb|EE075660.1|EE075660
genomic: CAGCAGTAGTTCCGTATTTTGGCTATGCCAGATCTGATAGAAAGgcaagtttta ... ttctcttcagACTCAAGGGCGTGAATCCATTGCAGCTAAACTTGTTGCAAATGTTATCACC
EST: CTGTCACAGCAGTAGTTCCGTATTTTGGCTATGCCAGATCTGATAGAAAG ACTCAAGGGCGTGAATCCATTGCAGCTAAACTTGTTGCAAATGTTATCACCEST: gi|352789974|gb|FQ479584.1|FQ479584
genomic: CTGTCACAGCAGTAGTTCCGTATTTTGGCTATGCCAGATCTGATAGAAAGgcaagtttta ... ttctcttcagACTCAAGGGCGTGAATCCATTGCAGCTAAACTTGTTGCAAATGTTATCACC
EST: CTGTCACAGCAGTAGTTCCGTATTTTGGCTATGCCAGATCTGATAGAAAG ACTCAAGGGCGTGAATCCATTGCAGCTAAACTTGTTGCAAATGTTATCACCEST: gi|30129654|gb|CB914993.1|CB914993
genomic: CTGTCACAGCAGTAGTTCCGTATTTTGGCTATGCCAGATCTGATAGAAAGgcaagtttta ... ttctcttcagACTCAAGGGCGTGAATCCATTGCAGCTAAACTTGTTGCAAATGTTATCACC
EST: CTGTCACAGCAGTAGTTCCGTATTTTGGCTATGCCAGATCTGATAGAAAG ACTCAAGGGCGTGAATCCATTGCAGCTAAACTTGTTGCAAATGTTATCACCEST: gi|161721761|gb|FC071122.1|FC071122
genomic: CTGTCACAGCAGTAGTTCCGTATTTTGGCTATGCCAGATCTGATAGAAAGgcaagtttta ... ttctcttcagACTCAAGGGCGTGAATCCATTGCAGCTAAACTTGTTGCAAATGTTATCACC
EST: CTGTCACAGCAGTAGTTCCGTATTTTGGCTATGCCAGATCTGATAGAAAG ACTCAAGGGCGTGAATCCATTGCAGCTAAACTTGTTGCAAATGTTATCACCEST: gi|351030850|gb|FQ438886.1|FQ438886
genomic: CTGTCACAGCAGTAGTTCCGTATTTTGGCTATGCCAGATCTGATAGAAAGgcaagtttta ... ttctcttcagACTCAAGGGCGTGAATCCATTGCAGCTAAACTTGTTGCAAATGTTATCACC
EST: CTGTCACAGCAGTAGTTCCGTATTTTGGCTATGCCAGATCTGATAGAAAG ACTCAAGGGCGTGAATCCATTGCAGCTAAACTTGTTGCAAATGTTATCACCEST: gi|110719024|gb|EE096529.1|EE096529
genomic: CTGTCACAGCAGTAGTTCCGTATTTTGGCTATGCCAGATCTGATAGAAAGgcaagtttta ... ttctcttcagACTCAAGGGCGTGAATCCATTGCAGCTAAACTTGTTGCAAATGTTATCACC
EST: CTGTCACAGCAGTAGTTTCGTATTTTGGCTATGCCAGATCTGAAA-AAAG AATCAAGGGCCTGAATCCATTGCAGCCAAACTTGTTGCAAAGGTTATCACC
genomic: CTGTCACAGCAGTAGTTCCGTATTTTGGCTATGCCAGATCTGATAGAAAGgcaagtttta ... ttctcttcagACTCAAGGGCGTGAATCCATTGCAGCTAAACTTGTTGCAAATGTTATCACC
atgctagaaatttacatgtaaattacatcttcttcatctgtatttttctcttcagACTCAAGGGCGTGAATCCATTGCAGCTAAACTTGTTGCAAATGTTATCACCAAAGCAGGTGCGGACCGTGTTCTTGCTTGTGATCTTCATTCTGGGCAGT
catcttcttcatctgt CT-rich tract
aaatttacatgtaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actgagaaatgatgggttgaacaatctacgtcatttctaaattggatgctagaaatttacatgtaaattacatcttcttcatctgtatttttctcttcagACTCAAGGGCGTGAATCCATTGCAGCTAAACTTGTTGCAAATGTTATCACCAAAGCAGGTGCGGACCGTGTTCTTGCTTGTGATCTTCATTCTGGGCAGT
- - -gaaatga
- - - - - - -gggttga
- - - - - - - - - - - - - - - - - - - - - -ggatgct
- - - - - - - - - - - - - - - - - - - - - - - - - agaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtaa