1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttgacgtctcatagtgaaaaaggaaattcaaatacttcacatgaacatgtttctaatcattgagttatctaatgaaggcctgattttacactttctatagGAAAATCATCTAGGAGAATGGGAATTTAGAAGCAAGAGCAAACAGAATAACTGCAGCCTGGAAGGAGGTTGCAGAGGTTACATGTTTGCACTGCAGGTGA
species | Vitis vinifera |
transcript | Vv01s0150g00320.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGCATGTCGTGAAGCATTGGAGGAAGCAGGAGTGAGAGGAATACTTGGT GAAAATCATCTAGGAGAATGGGAATTTAGAAGCAAGAGCAAACAGAATAACEST: gi|30306332|gb|CB983126.1|CB983126
genomic: CTGCATGTCGTGAAGCATTGGAGGAAGCAGGAGTGAGAGGAATACTTGGTgtatgttcca ... ctttctatagGAAAATCATCTAGGAGAATGGGAATTTAGAAGCAAGAGCAAACAGAATAAC
EST: GGAGTGAGAGGAATACTTGGT GAAAATCATCTAGGAGAATGGGGAATTTAGAAGCAAGAGCAAACAGAATAAEST: gi|110428236|gb|EC994702.1|EC994702
genomic: GGAGTGAGAGGAATACTTGGTgtatgttcca ... ctttctatagGAAAATCATCTAGGAGAAT-GGGAATTTAGAAGCAAGAGCAAACAGAATAA
EST: CTGCATGTCGTGAAGCATTGGAGGAAGCAGGAGTGAGAGGAATACTTGGT GAAGATCATCTAGGAGAATGGGAATTTAGAAGCAAGAGCAAACAGACTAACEST: gi|110385476|gb|EC950008.1|EC950008
genomic: CTGCATGTCGTGAAGCATTGGAGGAAGCAGGAGTGAGAGGAATACTTGGTgtatgttcca ... ctttctatagGAAAATCATCTAGGAGAATGGGAATTTAGAAGCAAGAGCAAACAGAATAAC
EST: CTGCATGTCGTGAAGCATTGGAGGAAGCAGGAGTGAGAGGAATACTTGGT GAAAATCATCTAGGAGAATGGGAATTTAGAAGCAAGAGCAAACAGAATAACEST: gi|26266118|gb|CA817181.1|CA817181
genomic: CTGCATGTCGTGAAGCATTGGAGGAAGCAGGAGTGAGAGGAATACTTGGTgtatgttcca ... ctttctatagGAAAATCATCTAGGAGAATGGGAATTTAGAAGCAAGAGCAAACAGAATAAC
EST: CTGCATGTCGTGAAGCATTGGAGGAAGCAGGAGTGAGAGGAATACTTGGT GAAAATCATCTAGGAGAATGGGAATTTAGAAGCAAGAGCAAACAGAATAACEST: gi|110362042|gb|EC925549.1|EC925549
genomic: CTGCATGTCGTGAAGCATTGGAGGAAGCAGGAGTGAGAGGAATACTTGGTgtatgttcca ... ctttctatagGAAAATCATCTAGGAGAATGGGAATTTAGAAGCAAGAGCAAACAGAATAAC
EST: CTGCATGTCGTGAAGCATTGGAGGAAGCAGGAGTGAGAGGAATACTTGGT GAAAATCATCTAGGAGAATGGGAATTTAGAAGCAAGAGCAAACAGAATAACEST: gi|351014144|gb|FQ434733.1|FQ434733
genomic: CTGCATGTCGTGAAGCATTGGAGGAAGCAGGAGTGAGAGGAATACTTGGTgtatgttcca ... ctttctatagGAAAATCATCTAGGAGAATGGGAATTTAGAAGCAAGAGCAAACAGAATAAC
EST: CTGCATGTCGTGAAGCATTGGAGGAAGCAGGAGTGAGAGGAATACTTGGT GAAAATCATCTAGGAGAATGGGAATTTAGAAGCAAGAGCAAACAGAATAAC
genomic: CTGCATGTCGTGAAGCATTGGAGGAAGCAGGAGTGAGAGGAATACTTGGTgtatgttcca ... ctttctatagGAAAATCATCTAGGAGAATGGGAATTTAGAAGCAAGAGCAAACAGAATAAC
catgtttctaatcattgagttatctaatgaaggcctgattttacactttctatagGAAAATCATCTAGGAGAATGGGAATTTAGAAGCAAGAGCAAACAGAATAACTGCAGCCTGGAAGGAGGTTGCAGAGGTTACATGTTTGCACTGCAGGTGA
cactttct CT-rich tract
ttatctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgacgtctcatagtgaaaaaggaaattcaaatacttcacatgaacatgtttctaatcattgagttatctaatgaaggcctgattttacactttctatagGAAAATCATCTAGGAGAATGGGAATTTAGAAGCAAGAGCAAACAGAATAACTGCAGCCTGGAAGGAGGTTGCAGAGGTTACATGTTTGCACTGCAGGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - tgaaaaa
- - - - - - - - - - - - - - caaatac
- - - - - - - - - - - - - - - - - - tcacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggcctga