Sequence
atgc intronic sequence ATGC exonic sequence...cattaataatgttaaagtagaagtggaagccattaactcaaagtatattaaggctctgtgctgcagttattgcttgaatttatctccttttttttgctagGGAGGAGTTTATGAAGAGAATGGTAGACAGTGGACGGCAAAAGATATAGCCCTTACAGAAAGGGCTTGTGCATGGATGCCTCATGGTTTCATGAGTGTAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0137g00630.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA05G30770.1 (Glycine max), 3'ss of exon 4
-----------------------------------------------------------------------------------------cattaataatgttaaagta-gaagtggaagccattaactcaaagtatattaaggctctgtgctgcagttattgcttgaatttatctccttttttt------tgctagGGAGGAGTTTATGAAGAGAATGGTAGACAGTGGACGGCAAAAGATATAGCCCTTACAGAAAGGGCTTGTGCATGGATGCCTCATGGTTTCATGAGTGTAA
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gtatttttgcatttcttctatgacttgatttttttttctttacctctgtattagaaatttgtagtgatggatgccttacataatacatttttttcttctaaaaaagtacaaaatagcaggcagaatatgagaatattgttttatcttaattggaagttcttgttgaccttgatttcctcctcttgcaatttcctagGGAGGTGCTTATCAAGAATCTGGTCGAGTGTGGCGTGCAAAAGACATAGCAATGCCAGAAAGGGCTTGTGCATGGATGCCTCACGGTTTCATGAGTGTAA
upper sequence: Vv01s0137g00630.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G13960.1 (Glycine max), 3'ss of exon 3
--------------------------------------------------------------------------------------------cattaataatgttaaagta-gaagtggaagccattaactcaaagtatattaaggctctgtgctgcagttattgcttgaatttatctccttttttt------tgctagGGAGGAGTTTATGAAGAGAATGGTAGACAGTGGACGGCAAAAGATATAGCCCTTACAGAAAGGGCTTGTGCATGGATGCCTCATGGTTTCATGAGTGTAA
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gtgttctttgcatttctgctatgacttgattttttttgtatacttttgtattagaaatttgaagtgatggatgccttacataatacctttttttttctttctaaaaatgtacaaaatggcaggcagaatatgataatattgttttatcttaattggaagttcttgttgaccttgatttcctcctcttgcaatttcctagGGAGGTGCTTATCAAGAATCTGGTCGAGTGTGGCATGCAAAAGACATAGCAATGCCAGAAAGGGCTTGTGCATGGATGCCTCACGGTTTCATGAGTGTAA
upper sequence: Vv01s0137g00630.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G37760.3 (Glycine max), 3'ss of exon 2
------------------------------------------------------------------------cat-taata-atgttaaagtagaa-gtggaagccattaactcaaagtatattaaggctctgtgctgcagttattgcttgaatttatctccttttttttgct-agGGAGGAGTTTATGAAGAGAATGGTAGACAGTGGACGGCAAAAGATATAGCCCTTACAGAAAGGGCTTGTGCATGGATGCCTCATGGTTTCATGAGTGTAA
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gtattgctttttatttatgctataatttgattatatttttttaaggaataaaatatgctctaatggatgccccatgtaatgcattttatcttgtaacattacaagcaagagttgaggatgttgctataccttaatccaaagtttcttgttgatctcctcctctttcaatgccttagGGAGGTGCTTATCAAGAATCTGGTCGAGTGTGGTATGCAAAAGACATAGCAATCCCGGAAAGGGCTTGTGCATGGATGTCTCATGGTTTCATGAGTGTAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattaaggctctgtgctgcagttattgcttgaatttatctccttttttttgctagGGAGGAGTTTATGAAGAGAATGGTAGACAGTGGACGGCAAAAGATATAGCCCTTACAGAAAGGGCTTGTGCATGGATGCCTCATGGTTTCATGAGTGTAA
tttatctccttttttt CT-rich tract
ttgaatttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cattaataatgttaaagtagaagtggaagccattaactcaaagtatattaaggctctgtgctgcagttattgcttgaatttatctccttttttttgctagGGAGGAGTTTATGAAGAGAATGGTAGACAGTGGACGGCAAAAGATATAGCCCTTACAGAAAGGGCTTGTGCATGGATGCCTCATGGTTTCATGAGTGTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - aagtagaa
- - - - - - - - - - - - -gaagcca
- - - - - - - - - - - - - - - - - aactcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttga