Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtttatgcaccccttcaagtttctttaagcggcagagtttaatttagcagcatatttctttagatgttgcattcttttgctacatattctttttgttctacagGTACCTTTGGTCAGGTTTTGGAATGCTGGGATAGGGAAACAAAGGAGATGGTTGCTATAAAAGTTGTTCGAGGTATCAAAAAATATCGTGAGGCAGCAAT

Basic information

species Vitis vinifera
transcript Vv01s0137g00580.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0137g00580.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os12g27520.4 (Oryza sativa), 3'ss of exon 3
----gtttgttta--tgcaccccttcaagtt---tctttaagcggcagagtttaatttagcagcatatttctttagatgttgcattcttttgctacatattctttttg----ttctacagGTACCTTTGGTCAGGTTTTGGAATGCTGGGATAGGGAAACAAAGGAGATGGTTGCTATAAAAGTTGTTCGAGGTATCAAAAAATATCGTGAGGCAGCAAT
    ||| |   |  |||  || ||  | ||     | | | |   |||  ||  ||         |||| || | |    | | | | |||  ||  |  |||||||    | |  ||||||||||||||||||| |||||||| |||||||||||||  || || ||||| || || ||  |  |  |||| || || || ||  | || || |||||
gtcagttgggagagctgcctccgttagaattgaacatcttaacttgagatgtttcttgcatgctgaatttgttgacagagcggagtatattgaaactgaaactttttggatatacatcagGTACCTTTGGTCAGGTATTGGAATGTTGGGATAGGGAAAGGAAAGAAATGGTGGCCATTAAGATCATCAGAGGCATTAAGAAGTACAGGGATGCTGCAAT

upper sequence: Vv01s0137g00580.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G063792_T06 (Zea mays), 3'ss of exon 3
gtttgtttatgcaccccttcaagtttctttaagcggcagagttta-atttagca-gcatatttctttagatgttgcattcttttgctacatattctt----tttg---ttctacagGTACCTTTGGTCAGGTTTTGGAATGCTGGGATAGGGAAACAAAGGAGATGGTTGCTATAAAAGTTGTTCGAGGTATCAAAAAATATCGTGAGGCAGCAAT
||  ||||      || |  |   |    ||   |    |  |   |||  ||| ||  ||   || ||    |    ||| |  ||  || |   |    | ||   | |  ||||||||||||||||||| ||||| || ||||||| ||||||||| || ||||| || |||||  |  |  | || || || || ||  | || || |||||
gtcagtttggatgaccatgtattctgaaatagttgatttaactcgcattgggcatgccaatacattcagcaaattttgtctataactgaatgtgtctggactctggaatacaccagGTACCTTTGGTCAGGTGTTGGAGTGTTGGGATAAGGAAACAAAAGAAATGGTGGCCATAAAGATCATCAGGGGCATTAAGAAGTACAGGGATGCTGCAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110709438|gb|EE084898.1|EE084898
EST:     ATAAGATCCACAGAAAAATTGGTGAAG                         GTACCTTTGGTCAGGTTTTGGAATGCTGGGATAGGGAAACAAAGGAGATGG
genomic: ATAAGATCCACAGAAAAATTGGTGAAGgtttgtttat ... tgttctacagGTACCTTTGGTCAGGTTTTGGAATGCTGGGATAGGGAAACAAAGGAGATGG
EST: gi|110732680|gb|EE108178.1|EE108178
EST:     ATAAGATCCACAGAAAAATTGGTGAAG                         GTACCTTTGGTCAGGTTTTGGAATGCTGGGATAGGGAAACAAAGGAGATGG
genomic: ATAAGATCCACAGAAAAATTGGTGAAGgtttgtttat ... tgttctacagGTACCTTTGGTCAGGTTTTGGAATGCTGGGATAGGGAAACAAAGGAGATGG
EST: gi|161716341|gb|FC064657.1|FC064657
EST:     ATAAGATCCACAGAAAAATTGGTGAAG                         GTACCTTTGGTCAGGTTTTGGAATGCTGGGATAGGGAAACAAAGGAGATGG
genomic: ATAAGATCCACAGAAAAATTGGTGAAGgtttgtttat ... tgttctacagGTACCTTTGGTCAGGTTTTGGAATGCTGGGATAGGGAAACAAAGGAGATGG
EST: gi|110712429|gb|EE090038.1|EE090038
EST:     ATAAGATCCACAGAAAAATTGGTGAAG                         GTACCTTTGGTCAGGTTTTGGAATGCTGGGATAGGGAAACAAAGGAGATGG
genomic: ATAAGATCCACAGAAAAATTGGTGAAGgtttgtttat ... tgttctacagGTACCTTTGGTCAGGTTTTGGAATGCTGGGATAGGGAAACAAAGGAGATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcatatttctttagatgttgcattcttttgctacatattctttttgttctacagGTACCTTTGGTCAGGTTTTGGAATGCTGGGATAGGGAAACAAAGGAGATGGTTGCTATAAAAGTTGTTCGAGGTATCAAAAAATATCGTGAGGCAGCAAT
                                    tattctttttgttct  CT-rich tract
                                tacatattcttttt  TA-rich tract