Sequence
atgc intronic sequence ATGC exonic sequence...gttgaagcctgtttttgatttatttatttctttgtgtgagtctgtagcctattttgagttatttattttcaatgaactaaaactttgacatgtattgcagCATAAAAATAAAATGGTGAATGAGGAACTCTGGAATGAGGCACGGACATATGGAGATACACAGTTAATGCCTTTTGTTGACTACTATAGCATCATCACTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0026g02530.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os06g12390.2 (Oryza sativa), 3'ss of exon 5
gttgaagcctgtttttgatttatttatttct--ttgtgtgagtctgtagcctattttgagttatttattttcaatgaactaaaactttgacatgtattgcagCATAAAAATAAAATGGTGAATGAGGAACTCTGGAATGAGGCACGGACATATGGAGATACACAGTTAATGCCTTTTGTTGACTACTATAGCATCATCACTT
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attgttccctttttttgccggcaccagttgtgctagtttgaattagggtacccttcttcagagttaaca--catctaccccttttcctgccattgttaaaagCATAAAAATGAGGTGGTGAATGAGGAACTTTGGAATGAAGCACGAACATATGGAGACATCCAATTGATGCCCTTTGTTGATTATTATAGCCTGATTCTAT
upper sequence: Vv01s0026g02530.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G042607_T01 (Zea mays), 3'ss of exon 3
gttgaagcctgtttttgatttatttatttctttgtgtgagtctgtagcctattttgagtta---tttattttcaatgaactaaaactttgacatgtattgcagCATAAAAATAAAATGGTGAATGAGGAACTCTGGAATGAGGCACGGACATATGGAGATACACAGTTAATGCCTTTTGTTGACTACTATAGCATCATCACTT
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agtcacttttctatatgttatacttctgccctt-tactagattgaattagatctcaatttagagtcaatactcaactgacccta-ctttgcattgt-taaaagCACAAAAATGAGTTGGTCAATGAGGAACTCTGGAATGAAGCACGAACATATGGAGACATCCAGTTGATGCCATTTGTGGATTACTATAGCCTGATTCTTT
upper sequence: Vv01s0026g02530.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G164072_T01 (Zea mays), 3'ss of exon 3
gttgaagcctgtttttgatttatttatttctttgtgtgagtctgtagcctattttgagttatttattttcaatgaactaaaact--ttgacatgtattgcagCATAAAAATAAAATGGTGAATGAGGAACTCTGGAATGAGGCACGGACATATGGAGATACACAGTTAATGCCTTTTGTTGACTACTATAGCATCATCACTT
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ctccaagaaagttg--gaatgatttataatctggaacagagggagtatatgttatacttttctaccctttactcatctggccctaccttccattgttaaaagCACAAAAACGAGGTGGTCAATGAGGAACTCTGGAATGAAGCACGAACATATGGAGACATCCAGTTGATGCCATTTGTGGATTACTATAGCCTGATTCTTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agcctattttgagttatttattttcaatgaactaaaactttgacatgtattgcagCATAAAAATAAAATGGTGAATGAGGAACTCTGGAATGAGGCACGGACATATGGAGATACACAGTTAATGCCTTTTGTTGACTACTATAGCATCATCACTT
ttatttattttcaatg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttgaagcctgtttttgatttatttatttctttgtgtgagtctgtagcctattttgagttatttattttcaatgaactaaaactttgacatgtattgcagCATAAAAATAAAATGGTGAATGAGGAACTCTGGAATGAGGCACGGACATATGGAGATACACAGTTAATGCCTTTTGTTGACTACTATAGCATCATCACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- tgaagcc
- - - - - - - - - - - - - - - - tgtgtga
- - - - - - - - - - - - - - - - - - - - - tgtagcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactaaa