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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactacctttttcaaagtagtcttgtttatttggcagcattgacataatttcagataatgcagttatttgtttgcagtattgagggcttcacaaattatgttatagtactgatgggagtgtcttctcactttaaatttgtttcatttcacagAATGTCGCACTTGAGTCATTGCAGAAATCACTTTTTTCAACAGACCTGATGG

Basic information

species Vitis vinifera
transcript Vv01s0026g02490.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71860764|gb|DT009819.1|DT009819
EST:     GGAATGTCACTTACAATCTCTATAGTCACAGCTTGCTTGATTTTGGTCAG                         AATGTTGCACTTGAGTCATTGCAGAAATCACTTTATTCAACAGACCTGATG
genomic: GGAATGTCACTTACAATCTCTATAGTCACAGCTTGCTTGATTTTGGTCAGgtaactacct ... catttcacagAATGTCGCACTTGAGTCATTGCAGAAATCACTTTTTTCAACAGACCTGATG
EST: gi|110356657|gb|EC919644.1|EC919644
EST:     GGAATGTCACTTACAATCTCTATAGTCACAGCTTGCTTGATTTTGGTCAG                         AATGTTGCACTTGAGTCATTGCAGAAATCACTTTATTCAACAGACCTGATG
genomic: GGAATGTCACTTACAATCTCTATAGTCACAGCTTGCTTGATTTTGGTCAGgtaactacct ... catttcacagAATGTCGCACTTGAGTCATTGCAGAAATCACTTTTTTCAACAGACCTGATG
EST: gi|161718808|gb|FC066355.1|FC066355
EST:     GGAATGTCACTTACAATCTCTATAGTCACAGCTTGCTTGATTTTGGTCAG                         AATGTTGCACTTGAGTCATTGCAGAAATCACTTTATTCAACAGACCTGATG
genomic: GGAATGTCACTTACAATCTCTATAGTCACAGCTTGCTTGATTTTGGTCAGgtaactacct ... catttcacagAATGTCGCACTTGAGTCATTGCAGAAATCACTTTTTTCAACAGACCTGATG
EST: gi|161712811|gb|FC062334.1|FC062334
EST:     GGAATGTCACTTACAATCTCTATAGTCACAGCTTGCTTGATTTTGGTCAG                         AATGTTGCACTTGAGTCATTG
genomic: GGAATGTCACTTACAATCTCTATAGTCACAGCTTGCTTGATTTTGGTCAGgtaactacct ... catttcacagAATGTCGCACTTGAGTCATTG
EST: gi|110359018|gb|EC919806.1|EC919806
EST:     GGAATGTCACTTACAATCTCTATAGTCACAGCTTGCTTGATTTTGGTCAG                         AATGTTGCACTTGAGTCATTGCAGAAATCACTTTATTCAACAGACCTGATG
genomic: GGAATGTCACTTACAATCTCTATAGTCACAGCTTGCTTGATTTTGGTCAGgtaactacct ... catttcacagAATGTCGCACTTGAGTCATTGCAGAAATCACTTTTTTCAACAGACCTGATG
EST: gi|110357251|gb|EC920660.1|EC920660
EST:     GGAATGTCACTTACAATCTCTATAGTCACAGCTTGCTTGATTTTGGTCAG                         AATGTTGCACTTGAGTCATTGCAGAAATCACTTTATTCAACAGACCTGATG
genomic: GGAATGTCACTTACAATCTCTATAGTCACAGCTTGCTTGATTTTGGTCAGgtaactacct ... catttcacagAATGTCGCACTTGAGTCATTGCAGAAATCACTTTTTTCAACAGACCTGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgttatagtactgatgggagtgtcttctcactttaaatttgtttcatttcacagAATGTCGCACTTGAGTCATTGCAGAAATCACTTTTTTCAACAGACCTGATGG
                         ttctcac  putative branch site (score: 2)
                                          tttcatttc  putative PPT
                                tttaaatttgtttcat  TA-rich tract