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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttagcaaagtttctgttcagtgctcattcatatcatttcatatggaaagttttaagatcaactttgctggacatgtctttattttttcaattggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTTGAAGATTCAGAAGGCTAAGGAAAAGCAAGCCTCAAAGAGCTGAGGTGAA

Basic information

species Vitis vinifera
transcript Vv01s0026g02410.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0026g02410.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os08g06040.1 (Oryza sativa), 3'ss of exon 3
gtatgttagcaaagtttctgttcagtgctcattcatatcatttcatatggaaagtt-ttaagatcaactttgctggacatgtctttattttttcaattggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTTGAAGATTCAGAAGGCTAAGGAAAAGCAAGCCTCAAAGAGCTGAGGTGAA
                        ||   |  ||  | ||  | | |||     || ||  |||||   ||| || ||   ||| | |              | | ||||||||| | || || || || ||||||||||| |||||||||||||| |||||||| |||||| | ||||| |||  |||   |        || |  |
------------------------gtaaaccatccaaacacattacatgctcctttcttgcgatcag--ttggtgaaccaatctatctgc---------acctcgcagGATCATCCGGGCTTTTTTGGTCGAGGAGCAGAAGATTGTGAAGAAGGTGTTGAAGATCCAGAAGACCAAGGACAAGTCAGCTAAATGATTGCAAGATAGA

upper sequence: Vv01s0026g02410.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G032564_T01 (Zea mays), 3'ss of exon 3
gtatgttagcaaagtttctgttcagtgctcattcatatcatttcatatggaaagttttaagatcaactttgctggacatgtctttattttttcaattggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTTGAAGATTCAGAAGGCTAAGGAAAAGCAAGCCTCAAAGAGCTGAGGTGAA----
        |  |   |||| |||    ||||| |   ||  || | |||   | |  | | |  || |   |||  |||||||                      ||||||||| | ||||| || || ||||||||||| || |||||||||||||||||||| || ||  | ||||| |||   ||||| |||| || ||| ||     
--------gtgaccattct-ttcgcaactcatgcccgtccattgaaatgattaatggtgatactaagtcacctg--catgtctc---------------------agGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTTGAAGATCCAAAAAACCAAGGATAAG---GCCTCCAAGAACT-AGGCGATATAG

upper sequence: Vv01s0026g02410.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA01G05740.1 (Glycine max), 3'ss of exon 3
gtatgttagcaaagtttctgttcagtgctcattcata-tcatttcatatggaaagttttaagatcaactttgctggacatgtctttattttttcaattggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTTGAAGATTCAGAAGGCTAAGGAAAAGCAAGCCTCAAAGAGCTGAGGTGAA
             |||| | ||    |    || | |   || |  |||   || |  || |||  | ||   ||  | |   ||||| | |      |||| | |||||| ||| ||||||||||||| || ||||| || |||||||||||||| |||||||| |||||||| ||||||||||| |||||||||   |||  |  |
-------------gtttgttttactagacttttaacagctatatattataataactcgtatgatttaattgtttg--cttacatttatctct------ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTTGAAGATCCAGAAGGCAAAGGAAAAGCAGGCCTCAAAGGCTTGAATTTGA

upper sequence: Vv01s0026g02410.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G11920.1 (Glycine max), 3'ss of exon 3
gtatgttagcaaagtttctgttcagt-gctcattcatatcatttcatatggaa-agttttaagatcaactttgctggacatgtctttattttttcaattggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTTGAAGATTCAGAAGGCTAAGGAAAAGCAAGCCTCAAAGAGCTGAGGTGAA
|| ||||   |   |   | | ||||     ||| |||  |  ||  |||    | || || | | || || | |       |  || | |||     ||||| | |||||| ||| |||| |||||||| || ||||| || |||||||||||||| |||||||| |||||||| |||||||||||||||||||||   |||  |  |
gtttgttt-tactctacttttacagttatatatttataataactcgcatgatttaattatatggtaaagttggtttatagcatgcttttatttgtgtctggttctatagGATTATCCGAGCTTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTTGAAGATCCAGAAGGCAAAGGAAAAGCAAGCCTCAAAGGCTTGAATTTGA

upper sequence: Vv01s0026g02410.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G41280.1 (Glycine max), 3'ss of exon 3
gtatgttagcaaagtttctgttcagtgctcattcatatc-atttcatatggaaagttttaagatcaactttgctggacatgtc-tttattttttcaattggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTTGAAGATTCAGAAGGCTAAGGAAAAGCAAGCCTCAAAGAGCTGAGGTGAA
             |||| | ||      || |    ||| |    || |  ||  || |  |  ||| ||    |   |  |   ||| ||||     ||||| ||||| |||||  |||| ||||| || || ||||| || |||||||| ||||| |||||||| || ||| | |||||||||||||| |  ||| |||||| |   
-------------gtttgtttttctcaatcttcttaatctacagtatgtttaattttctttgtgcaaattgatggagtaccttgcttacttttgtctctggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATTGAAGATCCAAAAGACAAAGGAAAAGCAAGCTTTGAAGGGCTGAGTTTTG

upper sequence: Vv01s0026g02410.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: PP1S200_25V6.1 (Physcomitrella patens), 3'ss of exon 3
----gtatgttagcaaagtttctgttcagtgctcattcatatcatttcatatggaaagttttaagatcaactttgctggacatgtctttattttttcaattggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTTGAAGATTCAGAAGGCTAAGGAAAAGCAAGCCTCAAAGAGCTGAGGTGAA
     | | ||   | |||   ||| || || |    |      | | |  |||||    | |  |||    || ||  | |  || | ||   ||   |  | |  | || || ||| |||| ||  |||| ||||| ||||| || |||||||||||||||||||| |||||| | ||||| ||    ||  | |||| |  |    ||
ttacatgtattgttatagt---tgtgca-tgtttgccctagctgtgtgacttggaa----tcatcatctgtatttcta-ataaatcgtgatcaattttgtccgat--gcagCATTATCCGAGCTTTTCTAGTTGAGGAACAGAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAGTCAAAGGAGAAATTGGCTGCTAAGACCCAATCCTAA

upper sequence: Vv01s0026g02410.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: PP1S39_364V6.1 (Physcomitrella patens), 3'ss of exon 3
gtatgttagcaaagtttctgttcagtgctcattcatatcatttcatatggaaagttttaagatcaactttgctggacatgtctttattttt---tcaattggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTTGAAGATTCAGAAGGCTAAGGAAAAGCAAGCCTCAAAGAGCTGAGGTGAA
         ||   ||| |   ||     | ||  |   ||||| |  |   |   |||| ||    | |  | |  ||  ||| |||||    ||| |  ||  |  || || ||| | || ||  | |||||||||||||||||||| ||||||||| | ||||| |||||| | ||||| ||    ||  | ||||    |  | | 
---------catgatttatagacataatgcgttgttgcaatttctttagtctacacttaacatgtgatgt-ttagttattgcttaattttccaatcattgtgtgattcagCATTATCCGGGCTTTTCTGGTGGAGGAGCAGAAAATTGTTAAGAAGGTTCTCAAGATCCAGAAGTCCAAGGAGAAAGTGGCTGCCAAGACTCAATCTTAG

upper sequence: Vv01s0026g02410.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: PP1S76_47V6.1 (Physcomitrella patens), 3'ss of exon 3
gtatgttagcaaagtttctgttcagtgctcattcatatcatttcatatggaaagttttaagatcaactttgctgga-catgtctttattttttcaattg--gttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTTGAAGATTCAGAAGGCTAAGGAAAAGCAAGCCTCAAAGAGCTGAGGTGAA
          |||  || | |||  |  | ||| ||  || | |      |   ||     |  | | || ||||| ||   | | |  | |  || ||  || ||  || |||||  |||| ||| | || |||||||||||||| || ||||||||| |||||||||||||| | ||||| ||    ||  | |||     |  | ||
---------gaaatattgtattccat-ttaattgattacagtgccaccacatcattcgtttaatatcgtttctggatcagaccctaacgtatggaactgtcgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCTGAAGATTCAGAAGTCCAAGGAGAAATTGGCTGCCAAGGCTCAATCTTAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110715774|gb|EE094207.1|EE094207
EST:     GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG                         GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: gi|349827592|gb|FQ422460.1|FQ422460
EST:     GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG                         GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: gi|27582239|gb|CB004934.1|CB004934
EST:     GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG                         GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: gi|71871363|gb|DT020418.1|DT020418
EST:     GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG                         GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: gi|110707256|gb|EE083500.1|EE083500
EST:     GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG                         GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: gi|110695694|gb|EE074007.1|EE074007
EST:     GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG                         GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: gi|110703427|gb|EE080263.1|EE080263
EST:     GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG                         GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: gi|110415626|gb|EC981549.1|EC981549
EST:     GAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG                         GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
genomic: GAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: gi|161716131|gb|FC066487.1|FC066487
EST:     GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG                         GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: gi|110414116|gb|EC979942.1|EC979942
EST:     GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG                         GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: gi|110691194|gb|EE069016.1|EE069016
EST:     GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG                         GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: gi|37187841|gb|CF607194.1|CF607194
EST:     GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG                         GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: gi|30134974|gb|CB920312.1|CB920312
EST:     GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG                         GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: gi|352785847|gb|FQ475850.1|FQ475850
EST:     GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG                         GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: gi|110419706|gb|EC985955.1|EC985955
EST:     GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG                         GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: gi|71875792|gb|DT024847.1|DT024847
EST:     GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG                         GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: gi|71867822|gb|DT016877.1|DT016877
EST:     GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG                         GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: gi|110400132|gb|EC966677.1|EC966677
EST:     GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG                         GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: gi|71866217|gb|DT015272.1|DT015272
EST:     GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG                         GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: gi|110732670|gb|EE108161.1|EE108161
EST:     GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG                         GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: gi|349824962|gb|FQ406534.1|FQ406534
EST:     GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG                         GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: gi|110365512|gb|EC928620.1|EC928620
EST:     GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG                         GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: gi|110426305|gb|EC992709.1|EC992709
EST:     GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG                         GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: gi|71866026|gb|DT015081.1|DT015081
EST:     GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG                         GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: gi|352789622|gb|FQ476220.1|FQ476220
EST:     GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG                         GATCGTCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
EST: gi|110717929|gb|EE094214.1|EE094214
EST:     GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAG                         GATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT
genomic: GTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagc ... ggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttttaagatcaactttgctggacatgtctttattttttcaattggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTTGAAGATTCAGAAGGCTAAGGAAAAGCAAGCCTCAAAGAGCTGAGGTGAA
                              tttattttttcaattg  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgttagcaaagtttctgttcagtgctcattcatatcatttcatatggaaagttttaagatcaactttgctggacatgtctttattttttcaattggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTTGAAGATTCAGAAGGCTAAGGAAAAGCAAGCCTCAAAGAGCTGAGGTGAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA