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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgttgggatatttattttctgcaacttcatgcatctttttttttttttttttcatttgtttattttgttttgctggatgtcccgtgtgactatcttatagGTCCGTCGGTTAGCAATGGAGGTCAAACAACTTGCCTCAGCTCGACAGATAACTGTTCTAAATGGGAATTCTGGCCAAATTG

Basic information

species Vitis vinifera
transcript Vv01s0026g01700.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30125948|gb|CB911287.1|CB911287
EST:     GGGATTCATCAAATGGTGAAGCTGACTATTCTGATGCTATTGCTGCCCAG                         GTCCGTCGGTTAGCAATGGAGGTCAAACAACTTGCCTCAGCTCGACAGATA
genomic: GGGATTCATCAAATGGTGAAGCTGACTATTCTGATGCTATTGCTGCCCAGgtatgtttac ... tatcttatagGTCCGTCGGTTAGCAATGGAGGTCAAACAACTTGCCTCAGCTCGACAGATA
EST: gi|110693432|gb|EE069656.1|EE069656
EST:     GGGATTCATCAAATGGTGAAGCTGACTATTCTGATGCTATTGCTGCCCAG                         GTCCGTCGGTTAGCAATGGAGGTCAAACAACTTGCCTCAGCTCGACAGATA
genomic: GGGATTCATCAAATGGTGAAGCTGACTATTCTGATGCTATTGCTGCCCAGgtatgtttac ... tatcttatagGTCCGTCGGTTAGCAATGGAGGTCAAACAACTTGCCTCAGCTCGACAGATA
EST: gi|161717886|gb|FC065984.1|FC065984
EST:     GGGATTCATCAAATGGTGAAGCTGACTATTCTGATGCTATTGCTGCCCAG                         GTCCGTCGGTTAGCAATGGAGGTCAAACAACTTGCCTCAGCTCGACAGATA
genomic: GGGATTCATCAAATGGTGAAGCTGACTATTCTGATGCTATTGCTGCCCAGgtatgtttac ... tatcttatagGTCCGTCGGTTAGCAATGGAGGTCAAACAACTTGCCTCAGCTCGACAGATA
EST: gi|30137104|gb|CB922442.1|CB922442
EST:     GGGATTCATCAAATGGTGAAGCTGACTATTCTGATGCTATTGCTGCCCAG                         GTCCGTCGGTTAGCAATGGAGGTCAAACAACTTGCCTCAGCTCGACAGATA
genomic: GGGATTCATCAAATGGTGAAGCTGACTATTCTGATGCTATTGCTGCCCAGgtatgtttac ... tatcttatagGTCCGTCGGTTAGCAATGGAGGTCAAACAACTTGCCTCAGCTCGACAGATA
EST: gi|161718575|gb|FC069322.1|FC069322
EST:     GGGATTCATCAAATGGTGAAGCTGACTATTCTGATGCTATTGCTGCCCAG                         GTCCGTCGGTTAGCAATGGAGGTCAAACAACTTGCCTCAGCTCGACAGATA
genomic: GGGATTCATCAAATGGTGAAGCTGACTATTCTGATGCTATTGCTGCCCAGgtatgtttac ... tatcttatagGTCCGTCGGTTAGCAATGGAGGTCAAACAACTTGCCTCAGCTCGACAGATA
EST: gi|161719703|gb|FC069425.1|FC069425
EST:     GGGATTCATCAAATGGTGAAGCTGACTATTCTGATGCTATTGCTGCCCAG                         GTCCGTCGGTTAGCAATGGAGGTCAAACAACTTGCCTCAGCTCGACAGATA
genomic: GGGATTCATCAAATGGTGAAGCTGACTATTCTGATGCTATTGCTGCCCAGgtatgtttac ... tatcttatagGTCCGTCGGTTAGCAATGGAGGTCAAACAACTTGCCTCAGCTCGACAGATA
EST: gi|71857008|gb|DT006063.1|DT006063
EST:     GGGATTCATCAAATGGTGAAGCTGACTATTCTGATGCTATTGCTGCCCAG                         GTCCGTCGGTTAGCAATGGAGGTCAAACAACTTGCCTCAGCTCGACAGATA
genomic: GGGATTCATCAAATGGTGAAGCTGACTATTCTGATGCTATTGCTGCCCAGgtatgtttac ... tatcttatagGTCCGTCGGTTAGCAATGGAGGTCAAACAACTTGCCTCAGCTCGACAGATA
EST: gi|110722964|gb|EE099738.1|EE099738
EST:     GGGATTCATCAAATGGTGAAGCTGACTATTCTGATGCTATTGCTGCCCAG                         GTCCGTCGGTTAGCAATGGAGGTCAAACAACTTGCCTCAGCTCGACAGATA
genomic: GGGATTCATCAAATGGTGAAGCTGACTATTCTGATGCTATTGCTGCCCAGgtatgtttac ... tatcttatagGTCCGTCGGTTAGCAATGGAGGTCAAACAACTTGCCTCAGCTCGACAGATA
EST: gi|110713393|gb|EE089276.1|EE089276
EST:     GGGATTCATCAAATGGTGAAGCTGACTATTCTGATGCTATTGCTGCCCAG                         GTCCGTCGGTTAGCAATGGAGGTCAAACAACTTGCCTCAGCTCGACAGATA
genomic: GGGATTCATCAAATGGTGAAGCTGACTATTCTGATGCTATTGCTGCCCAGgtatgtttac ... tatcttatagGTCCGTCGGTTAGCAATGGAGGTCAAACAACTTGCCTCAGCTCGACAGATA
EST: gi|161720924|gb|FC070664.1|FC070664
EST:     GGGATTCATCAAATGGTGAAGCTGACTATTCTGATGCTATTGCTGCCCAG                         GTCCGTCGGTTAGCAATGGAGGTCAAACAACTTGCCTCAGCTCGACAGATA
genomic: GGGATTCATCAAATGGTGAAGCTGACTATTCTGATGCTATTGCTGCCCAGgtatgtttac ... tatcttatagGTCCGTCGGTTAGCAATGGAGGTCAAACAACTTGCCTCAGCTCGACAGATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttcatttgtttattttgttttgctggatgtcccgtgtgactatcttatagGTCCGTCGGTTAGCAATGGAGGTCAAACAACTTGCCTCAGCTCGACAGATAACTGTTCTAAATGGGAATTCTGGCCAAATTG
                                            ctatctt  CT-rich tract
     ttcatttgtttatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgttgggatatttattttctgcaacttcatgcatctttttttttttttttttcatttgtttattttgttttgctggatgtcccgtgtgactatcttatagGTCCGTCGGTTAGCAATGGAGGTCAAACAACTTGCCTCAGCTCGACAGATAACTGTTCTAAATGGGAATTCTGGCCAAATTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC
tgttggg
- - - - - - - - - ctgcaac
- - - - - - - - - - - - - tcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccgtgt