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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattttttctcagaatcatccatgtttattttggtgatttgagaaatcacagacctagtttatttataacaatggcagGTGTTTGACGAAGCAGATATGCTTCTTTGTGGGAGCTTTCAGAATCAAGTCATCCGTCTCATAGATATGCTTCGTTTTGATGAAAAGATATTGTCTCGCA

Basic information

species Vitis vinifera
transcript Vv01s0026g00640.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0026g00640.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G100043_T01 (Zea mays), 3'ss of exon 3
----------gtaaat-tttttctcagaatcatccatgtttattttggt----gatttgagaaatcacaga----cctagtttatttataacaatggcagGTGTTTGACGAAGCAGATATGCTTCTTTGTGGGAGCTTTCAGAATCAAGTCATCCGTCTCATAGATATGCTTCGTTTTGATGAAAAGATATTGTCTCGCA
          ||   | || |  |   || ||   || |  | |   ||    |||||      |   |||    |||| |   |  |||        |||||||||| |||||||| ||||| || ||||| || ||| |||| || ||||| ||||||||  ||||| |  | |||||||||||| || | ||| |  
tccctttcatgttcctgttctgttttaaagcaagtatttgaactgcagtacttgattttctggctactagaaagtcctaataattgcatatttggaatagGTGTTTGATGAAGCAGACATGCTACTCTGTGGAAGTTTTGAGAACCAGGTCATTCGTCTCATCAATATGTTGAGATTTGATGAAAAGCTACTTTCTAGAG

upper sequence: Vv01s0026g00640.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G40250.1 (Glycine max), 3'ss of exon 2
------gtaaattt----tttctcagaatcatccatgtttatt---ttggtgatttgagaaatcacag-----acctagt-ttatttataacaatggcagGTGTTTGACGAAGCAGATATGCTTCTTTGTGGGAGCTTTCAGAATCAAGTCATCCGTCTCATAGATATGCTTCGTTTTGATGAAAAGATATTGTCTCGCA
      ||| ||||    |||  || ||| || |  || ||     |  |||| || ||   | |        || | || |||| | |   | || ||||||||||| ||||| ||  ||||||| ||||||||||| |||||| |||| |||||  | ||| |  |||| || |||||||||||  | ||||||||  
tatgtggtatatttctgattttacataattatgccagtgtaaaagatatgtgaattaagctttgatgcttattacgttgtgttatatttcttactgtcagGTGTTTGATGAAGCTGACTTGCTTCTCTGTGGGAGCTTCCAGAATAAAGTAATCCGCTTGATAAACTTGCTCCGCTTTGATGAAAAACTCTTGTCTCGAT

upper sequence: Vv01s0026g00640.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G59990.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaaattttttctcagaatcatccatgtttattttggtgatttgagaaatcacagacctagtttatttataacaatggcagGTGTTTGACGAAGCAGATATGCTTCTTTGTGGGAGCTTTCAGAATCAAGTCATCCGTCTCATAGATATGCTTCGTTTTGATGAAAAGATATTGTCTCGCA
|||   ||||  |  | |   |   ||||  ||| | | | |||  |  || |     | |  | |||  |    |  ||||| ||||| ||||| ||||||||||| ||||| ||||| ||||||||  | |||||||| ||| ||||||| ||||| ||||| ||     |||||||  
gtatggttttcttgtgtagagtt-gtgtt-gtttggatcacttgc-aggtcgcc--ttttgaatgtttggattgctttcagGTCTTTGATGAAGCTGATATGCTTCTGTGTGGAAGCTTCCAGAATCAGATTATCCGTCTGATAAATATGCTGCGTTTCGATGAGAAACAGGTGTCTCGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttattttggtgatttgagaaatcacagacctagtttatttataacaatggcagGTGTTTGACGAAGCAGATATGCTTCTTTGTGGGAGCTTTCAGAATCAAGTCATCCGTCTCATAGATATGCTTCGTTTTGATGAAAAGATATTGTCTCGCA
                                        ttataac  putative branch site (score: 2)
                                tagtttatttataaca  TA-rich tract