Sequence
atgc intronic sequence ATGC exonic sequence...tatgctgattaaagttcattctcatgttattgttttggtctcttataatttttttgtgtatatttgtttcttgaaataattctcactggaaatcatgcagATACCAGACCAAAGCTGGTCACTGGATCCGCTGAAGGATACTCTGGACATGTAGATGGGAGGCTCAGAGAGGCAAGGATGAATCATCCGAAGGGGCTTAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0026g00330.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G03810.1 (Glycine max), 3'ss of exon 3
tatgctgattaaagttcattctcatgttattgttttggtctcttataatttttttgtgtatatttgtttcttga--aataattctcactg-gaaatcatgcagATACCAGACCAAAGCTGGTCACTGGATCCGCTGAAGGATACTCTGGACATGTAGATGGGAGGCTCAGAGAGGCAAGGATGAATCATCCGAAGGGGCTTAC
|| |||| || ||||| || | || ||||| | | | | ||| || || ||| | ||| | | ||| |||||||||||||||||||||||| | ||||| ||||||||||| ||||||||||| ||||| ||||| || ||||| ||||||||||| || |||||| | |
-tctctttttaatgtagtttctc-tgccacacttgaaccaatttata-tgaatgtatatattttccttacttaaagaatggcatgtgcaatgcaattttgcagATACCAGACCAAAGCTGGTGGCAGGATCTGCTGAAGGATATTCTGGACATGTTGATGGAAGGCTTAGGGAGGCCAGGATGAATCACCCAAAGGGGATAGC
upper sequence: Vv01s0026g00330.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA01G03880.1 (Glycine max), 3'ss of exon 3
tatgctgattaaagttcattctcatgttattgttttggtctcttataatttttttgtgtatatttgtttcttgaaata----attctcactggaaatcatgcagATACCAGACCAAAGCTGGTCACTGGATCCGCTGAAGGATACTCTGGACATGTAGATGGGAGGCTCAGAGAGGCAAGGATGAATCATCCGAAGGGGCTTAC
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--tctctttttaatgtaatttttatgcc-tcacttgaaccaatttatttgaatgtgtacattttctttacttgaaaaatggcatgtgcaatgcaattt-tgcagATAGCAGACCGAAGCTGGTGGCAGGATCTGCTGAAGGATATTCTGGACATGTTGATGGAAGGTTTAGGGAGGCGAGGATGAATCACCCCAAAGGGATAAC
upper sequence: Vv01s0026g00330.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G18550.1 (Glycine max), 3'ss of exon 2
-------tatgctgattaaagttcattctcatgttattgttttggtctcttataatttttttgtgtatatttgtttcttgaaataattctcactggaaatcatgcagATACCAGACCAAAGCTGGTCACTGGATCCGCTGAAGGATACTCTGGACATGTAGATGGGAGGCTCAGAGAGGCAAGGATGAATCATCCGAAGGGGCTTAC
||||| | | |||| | | | || | | | | ||| || ||| || | | |||||| |||| || || | |||||| | |||||| |||||||| | || || |||||||| || ||||||||||| ||||||| ||| || ||||| |||||||| ||||| |||||| | ||
gaatataattgctg-tgatagttaaattccttgcatgtatgtatatactgtattatgaacttgagttgaagaacat-----aataatgctcattgcaa-ttgtgcagACAGCAGACCCAAGCTGGTGGCAGGGTCGGCTGAAGGTTATTCTGGACATGTTGATGGGAAGCTTAGGGAGGCTAGGATGAACCATCCAAAGGGGATAAC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taatttttttgtgtatatttgtttcttgaaataattctcactggaaatcatgcagATACCAGACCAAAGCTGGTCACTGGATCCGCTGAAGGATACTCTGGACATGTAGATGGGAGGCTCAGAGAGGCAAGGATGAATCATCCGAAGGGGCTTAC
ttctcac putative branch site (score: 2)
tatatttgtttcttga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tatgctgattaaagttcattctcatgttattgttttggtctcttataatttttttgtgtatatttgtttcttgaaataattctcactggaaatcatgcagATACCAGACCAAAGCTGGTCACTGGATCCGCTGAAGGATACTCTGGACATGTAGATGGGAGGCTCAGAGAGGCAAGGATGAATCATCCGAAGGGGCTTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
tatgctg
- - - - - - - - cattctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcactg