Sequence
atgc intronic sequence ATGC exonic sequencegtacataacgccctggcttcaccctcctctttgagcatattgcttcttacttgtgagccttgggctaaatccatgggcttctaagcccgggcttaaacttctacatgattttggccctcaaacggctttccatggtggttgggattattaatcatatgcatttgtggatatagGTGTGCTGGGAGAAGTTCGCAAGGTACTTTGAGGTAGAACTGAAGGAAGTGAAATTGAGGGACGGCTACTATGTAATGGACCCAGAGAAAGCTGTGGAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g06600.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G40840.1 (Glycine max), 3'ss of exon 3
gtacataacgccctggcttcaccctcctctttgagcatattgcttcttacttgtgagccttgggctaaatccatgggcttctaagcccgggcttaaacttctacatgattttggccctcaaacggctttccatggtggttgggattat-taatcatatgcatttgtggatatagGTGTGCTGGGAGAAGTTCGCAAGGTACTTTGAGGTAGAACTGAAGGAAGTGAAATTGAGGGACGGCTACTATGTAATGGACCCAGAGAAAGCTGTGGAAA
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-----------------------------------------------------------------tagagatatatgttagaaagagtgtactagagagtgt---tactagcgctcctctgatataaaaaataagtcattgagcttaaataat--tctgctcttatgaa----gGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGCTGAAAGAGGTGAAGCTGCGTGATGGATACTATGTAATGGACCCTGAAAAAGCAGTGGAAA
upper sequence: Vv01s0011g06600.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA14G39170.1 (Glycine max), 3'ss of exon 4
gtacataacgccctggcttcaccctcctctttgagcatattgcttcttacttgtgagccttgggctaaatccatgggcttctaagcccgggcttaaacttctacatgattttggccctcaaacggctttccatggtggttgggattattaatcatatgcatttgtggatatagGTGTGCTGGGAGAAGTTCGCAAGGTACTTTGAGGTAGAACTGAAGGAAGTGAAATTGAGGGACGGCTACTATGTAATGGACCCAGAGAAAGCTGTGGAAA
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-----------------------------------------------------------------ctctttcatgattttgtaacacttaa--taaatttaatcaataataaaaaatatgttagaaagagtatattag---agagtcttactagcactcctctggtga---agGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGCTGAAAGAGGTGAAGCTGCGTGATGGATACTATGTAATGGACCCTGAAAAAGCAGTGGAAA
upper sequence: Vv01s0011g06600.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G33280.1 (Glycine max), 3'ss of exon 1
gtacataacgccctggcttcaccctcctctttgagcatattgcttcttacttgtgagccttgggctaaatccatgggcttctaagcccgggcttaaacttctacatgattttggccctcaaacggctttccatggtggt--tgggattattaatcatatgcatttgtggatatagGTGTGCTGGGAGAAGTTCGCAAGGTACTTTGAGGTAGAACTGAAGGAAGTGAAATTGAGGGACGGCTACTATGTAATGGACCCAGAGAAAGCTGTGGAAA
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--------------------------------------------------------------------gtacatacacttcaaaacatttttattaatttttcaagagcattgtttgttgagtaatatagtatggaactaatcagagttttaattgattaattatgtgtgttcagGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTGAAGGAGGTGAAGCTCCGTGATGATTACTATGTGATGGACCCTGAAAAGGCCGTGGAATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352791108|gb|FQ477435.1|FQ477435EST: AGGGGAAGCCTTATGACAAGCCCAACATCGTCACTGGTGCTAATGTTCAG GTGTGCTGGGAGAAGTTCGCAAGGTACTTTGAGGTAGAACTGAAGGAAGTG
genomic: AGGGGAAGCCTTATGACAAGCCCAACATCGTCACTGGTGCTAATGTTCAGgtacataacg ... gtggatatagGTGTGCTGGGAGAAGTTCGCAAGGTACTTTGAGGTAGAACTGAAGGAAGTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caaacggctttccatggtggttgggattattaatcatatgcatttgtggatatagGTGTGCTGGGAGAAGTTCGCAAGGTACTTTGAGGTAGAACTGAAGGAAGTGAAATTGAGGGACGGCTACTATGTAATGGACCCAGAGAAAGCTGTGGAAA
tattaat putative branch site (score: 2)
attattaatcatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacataacgccctggcttcaccctcctctttgagcatattgcttcttacttgtgagccttgggctaaatccatgggcttctaagcccgggcttaaacttctacatgattttggccctcaaacggctttccatggtggttgggattattaatcatatgcatttgtggatatagGTGTGCTGGGAGAAGTTCGCAAGGTACTTTGAGGTAGAACTGAAGGAAGTGAAATTGAGGGACGGCTACTATGTAATGGACCCAGAGAAAGCTGTGGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG