1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtttgtctactcattatacatgtttaccaatttgacaagaattacaacaaatgattttgtattttatctagttgcctagaataacctcttaatacatatacttcatgcagTATGCTTTTAATCTCTTTTCACACAATGCACCTGTTCTTCCAAATGGGTACAATGAAGAGGAAATGAAATTAGTAAAAGAGACAAGGAAAATCTGG
species | Vitis vinifera |
transcript | Vv01s0011g05860.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTCTTGGAGGGAAAACAACCAACTTGTACAATTTTCAAGCAACAG TATGCTTTTAATCTCTTTTCACACAATGCACCTGTTCTTCCAAATGGGTACEST: gi|110685945|gb|EE063110.1|EE063110
genomic: GTCTTGGAGGGAAAACAACCAACTTGTAAAATTTTCAAGCAACAGgtttgtctac ... cttcatgcagTATGCTTTTAATCTCTTTTCACACAATGCACCTGTTCTTCCAAATGGGTAC
EST: GTCTTGGAGGGAAAA-AACCAACTTGTAAAATTTTCAAGCAACAG TATGCTTTTAATCTCTTTTCACACAATGCACCTGTTCTTCCAAATGGGTANEST: gi|34546869|gb|CF515101.1|CF515101
genomic: GTCTTGGAGGGAAAACAACCAACTTGTAAAATTTTCAAGCAACAGgtttgtctac ... cttcatgcagTATGCTTTTAATCTCTTTTCACACAATGCACCTGTTCTTCCAAATGGGTA-
EST: CCAACTTGTAAAATTTTCAAGCAACAG TATGCTTTTAATCTCTTTTCACACAATACACCTGTTCTTCCAAATGGGTACEST: gi|26267158|gb|CA818221.1|CA818221
genomic: CCAACTTGTAAAATTTTCAAGCAACAGgtttgtctac ... cttcatgcagTATGCTTTTAATCTCTTTTCACACAATGCACCTGTTCTTCCAAATGGGTAC
EST: CAACTTGTAAAATTTTCAAGCAACAG TATGCTTTTAATCTCTTTTCACACAATGCACCTGTTCTTCCAAATGGGTACEST: gi|161717637|gb|FC068527.1|FC068527
genomic: CAACTTGTAAAATTTTCAAGCAACAGgtttgtctac ... cttcatgcagTATGCTTTTAATCTCTTTTCACACAATGCACCTGTTCTTCCAAATGGGTAC
EST: GTCTTGGAGGGAAAACAACCAACTTGTAAAATTTTCAAGCAACAG TATGCTTTTAATCTCTTTTCACACAATGCACCTGTTCTTCCAAATGGGTACEST: gi|34546690|gb|CF514922.1|CF514922
genomic: GTCTTGGAGGGAAAACAACCAACTTGTAAAATTTTCAAGCAACAGgtttgtctac ... cttcatgcagTATGCTTTTAATCTCTTTTCACACAATGCACCTGTTCTTCCAAATGGGTAC
EST: GTGAGGTCTTGAAGGGAAAACAACCAACTTGTAAAATTTTCAAGCAACAG TATGCTTTTAATCTCTTTTCACACAATACACCTGTTCTTCCAAATGGGTAC
genomic: GTGAGGTCTTGGAGGGAAAACAACCAACTTGTAAAATTTTCAAGCAACAGgtttgtctac ... cttcatgcagTATGCTTTTAATCTCTTTTCACACAATGCACCTGTTCTTCCAAATGGGTAC
tttgtattttatctagttgcctagaataacctcttaatacatatacttcatgcagTATGCTTTTAATCTCTTTTCACACAATGCACCTGTTCTTCCAAATGGGTACAATGAAGAGGAAATGAAATTAGTAAAAGAGACAAGGAAAATCTGG
ttaatacatatactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtctactcattatacatgtttaccaatttgacaagaattacaacaaatgattttgtattttatctagttgcctagaataacctcttaatacatatacttcatgcagTATGCTTTTAATCTCTTTTCACACAATGCACCTGTTCTTCCAAATGGGTACAATGAAGAGGAAATGAAATTAGTAAAAGAGACAAGGAAAATCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA