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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatagcaatgctttttccagggcaataagatgtggaacatgattgcttgaacaacagttttgcagaattagtttacgtttattaattcagagctctgtctctgttcttttatggactagcagGTTGAGAATCTGGCTGAAAGGATGGTTAAATGGTTGAAAGTTGGTGGTTTTCTCTTCCTTAGAGAGTCTTCTTTTCATCAATCGGGTGATTTTCAAAGCA

Basic information

species Vitis vinifera
transcript Vv01s0011g05220.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g05220.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA07G11580.1 (Glycine max), 3'ss of exon 3
gtaatagcaatgctttttccagggcaataagatgtggaacatgattgcttga-acaacagttttgcagaattagtttacgtttattaat--tcagagctctgtctctgttcttttatggactagcagGTTGAGAATCTGGCTGAAAGGATGGTTAAATGGTTGAAAGTTGGTGGTTTTCTCTTCCTTAGAGAGTCTTCTTTTCATCAATCGGGTGATTTTCAAAGCA
                          | ||   |||  |  || || ||||  || ||  ||||      ||    |     |  | ||  | |  ||| |   | | | | || ||    |  |||||||||||| | |||| ||||||| | |||||||| ||||||||||| | | | ||| | ||||| || | ||| || ||||| || ||||   | || |
-------------------------gagaaatagtgacat-tgcttccttgtcactactttttttttttctttccctcttcctccttatagttaaggcttttattatttcccttgattcgttt-cagGTTGAGAATTTAGCTGCAAGGATGATCAAATGGTTAAAAGTTGGTGGATATGTATTCTTCAGAGAATCATGTTTCCACCAATCTGGAGATTCCAAGAGAA

upper sequence: Vv01s0011g05220.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA09G30650.2 (Glycine max), 3'ss of exon 2
-gtaatagcaatgctttttccagggcaataagatgtggaacatgattgcttgaacaacagttttgcagaattagtttacgtttattaattcagagctctgtctctgttcttttatggactagcagGTTGAGAATCTGGCTGAAAGGATGGTTAAATGGTTGAAAGTTGGTGGTTTTCTCTTCCTTAGAGAGTCTTCTTTTCATCAATCGGGTGATTTTCAAAGCA
 | |||||  |   |  ||||  | || ||     |      | ||| | |   || |    ||  |||    | ||    |||||| ||           ||   |||||||         |||||||||||| | |||| ||||||| | |||||||| ||||||||||| | | | ||| | ||||| || | ||| || ||||| || ||||   | || |
agaaatagtgacattgcttccttgtcactacctcttttttttttattccct---catcctccttatagataaggctt----ttattatttt---------ccttgattctttt---------cagGTTGAGAATTTAGCTGCAAGGATGATCAAATGGTTAAAAGTTGGTGGATATGTATTCTTCAGAGAATCATGTTTCCACCAATCTGGAGATTCCAAGAGAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagtttacgtttattaattcagagctctgtctctgttcttttatggactagcagGTTGAGAATCTGGCTGAAAGGATGGTTAAATGGTTGAAAGTTGGTGGTTTTCTCTTCCTTAGAGAGTCTTCTTTTCATCAATCGGGTGATTTTCAAAGCA
            tattaat  putative branch site (score: 2)
     ttacgtttattaatt  TA-rich tract